Gene : Glyma.11G072500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31604:SF3 - PROTEIN SHI RELATED SEQUENCE 1-RELATED Genomic Order:  725
Name:  ? Glyma.11G072500 Secondary Identifier:  ? PAC:30528391
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G072500 0.5kb upstream 0.5kb upstream 3649 true Chr11: 5418641-5422289 Glycine max
Glyma.11G072500 0.5kb upstream 0.5kb upstream 500 false Chr11: 5418641-5419140 Glycine max
Glyma.11G072500 0.5kb downstream 0.5kb downstream 3649 true Chr11: 5419141-5422789 Glycine max
Glyma.11G072500 0.5kb downstream 0.5kb downstream 500 false Chr11: 5422290-5422789 Glycine max
Glyma.11G072500 1.0kb upstream 1.0kb upstream 4149 true Chr11: 5418141-5422289 Glycine max
Glyma.11G072500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 5418141-5419140 Glycine max
Glyma.11G072500 1.0kb downstream 1.0kb downstream 4149 true Chr11: 5419141-5423289 Glycine max
Glyma.11G072500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 5422290-5423289 Glycine max
Glyma.11G072500 2.0kb upstream 2.0kb upstream 5149 true Chr11: 5417141-5422289 Glycine max
Glyma.11G072500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 5417141-5419140 Glycine max
Glyma.11G072500 2.0kb downstream 2.0kb downstream 5149 true Chr11: 5419141-5424289 Glycine max
Glyma.11G072500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 5422290-5424289 Glycine max
Glyma.11G072500 5.0kb upstream 5.0kb upstream 8149 true Chr11: 5414141-5422289 Glycine max
Glyma.11G072500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 5414141-5419140 Glycine max
Glyma.11G072500 5.0kb downstream 5.0kb downstream 8149 true Chr11: 5419141-5427289 Glycine max
Glyma.11G072500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 5422290-5427289 Glycine max
Glyma.11G072500 10.0kb upstream 10.0kb upstream 13149 true Chr11: 5409141-5422289 Glycine max
Glyma.11G072500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 5409141-5419140 Glycine max
Glyma.11G072500 10.0kb downstream 10.0kb downstream 13149 true Chr11: 5419141-5432289 Glycine max
Glyma.11G072500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 5422290-5432289 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311985 5265 Fabidae View MSA
124067577 5270 Rosid View MSA
123749314 5271 Pentapetalae View MSA
122796752 5272 Eudicot View MSA
122049669 5273 Angiosperm View MSA
121344202 5274 Embryophyte View MSA
123379999 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.01908 0.0 3.99446    
cufflinks 4.88953 0.0 15.8906   High
cufflinks 2.24338 0.0 6.94989    
cufflinks 1.13107 0.0 4.21504    
cufflinks 0.578706 0.0 2.53261   Low
cufflinks 1.2948 0.0 4.76115    
cufflinks 0.37178 0.0 1.45632   Low
cufflinks 2.6267 0.0 10.0757    
cufflinks 2.4843 0.0 7.49661    
cufflinks 0.863        
cufflinks 0.076       Low
cufflinks 2.729       High
cufflinks 0.098       Low
cufflinks 0.071     Low Low
cufflinks 1.192        
cufflinks 0.857        
cufflinks 0.804        
cufflinks 2.843       High
cufflinks 4.545       High
cufflinks 0.51        
cufflinks 0.089       Low
cufflinks 0.743        
cufflinks 0.492        
cufflinks 0.087       Low
cufflinks 0.705        
cufflinks 0.18        

0 Strain