Gene : Glyma.11G068300 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12894:SF10 - VAM6/VPS39-LIKE PROTEIN Genomic Order:  683
Name:  ? Glyma.11G068300 Secondary Identifier:  ? PAC:30528173
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G068300 0.5kb upstream 0.5kb upstream 7673 true Chr11: 5125976-5133648 Glycine max
Glyma.11G068300 0.5kb upstream 0.5kb upstream 500 false Chr11: 5125976-5126475 Glycine max
Glyma.11G068300 0.5kb downstream 0.5kb downstream 7673 true Chr11: 5126476-5134148 Glycine max
Glyma.11G068300 0.5kb downstream 0.5kb downstream 500 false Chr11: 5133649-5134148 Glycine max
Glyma.11G068300 1.0kb upstream 1.0kb upstream 8173 true Chr11: 5125476-5133648 Glycine max
Glyma.11G068300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 5125476-5126475 Glycine max
Glyma.11G068300 1.0kb downstream 1.0kb downstream 8173 true Chr11: 5126476-5134648 Glycine max
Glyma.11G068300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 5133649-5134648 Glycine max
Glyma.11G068300 2.0kb upstream 2.0kb upstream 9173 true Chr11: 5124476-5133648 Glycine max
Glyma.11G068300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 5124476-5126475 Glycine max
Glyma.11G068300 2.0kb downstream 2.0kb downstream 9173 true Chr11: 5126476-5135648 Glycine max
Glyma.11G068300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 5133649-5135648 Glycine max
Glyma.11G068300 5.0kb upstream 5.0kb upstream 12173 true Chr11: 5121476-5133648 Glycine max
Glyma.11G068300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 5121476-5126475 Glycine max
Glyma.11G068300 5.0kb downstream 5.0kb downstream 12173 true Chr11: 5126476-5138648 Glycine max
Glyma.11G068300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 5133649-5138648 Glycine max
Glyma.11G068300 10.0kb upstream 10.0kb upstream 17173 true Chr11: 5116476-5133648 Glycine max
Glyma.11G068300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 5116476-5126475 Glycine max
Glyma.11G068300 10.0kb downstream 10.0kb downstream 17173 true Chr11: 5126476-5143648 Glycine max
Glyma.11G068300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 5133649-5143648 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302080 5265 Fabidae View MSA
124065437 5270 Rosid View MSA
123737407 5271 Pentapetalae View MSA
122791369 5272 Eudicot View MSA
122042923 5273 Angiosperm View MSA
121345932 5274 Embryophyte View MSA
123428312 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.2301 0.0 35.06   Low
cufflinks 13.6822 0.0 49.582    
cufflinks 13.2387 0.0 45.843    
cufflinks 18.3953 0.0 69.012   High
cufflinks 10.7867 0.0 33.6155   Low
cufflinks 16.9836 0.0 60.8177    
cufflinks 18.2123 0.0 68.8611   High
cufflinks 15.001 0.0 52.606    
cufflinks 11.4023 0.0 34.8116    
cufflinks 2.187       High
cufflinks 0.962       Low
cufflinks 2.034       High
cufflinks 1.499        
cufflinks 1.156        
cufflinks 0.652       Low
cufflinks 1.525        
cufflinks 1.76        
cufflinks 1.744        
cufflinks 2.016       High
cufflinks 1.718        
cufflinks 0.833       Low
cufflinks 1.778        
cufflinks 1.195        
cufflinks 1.186        
cufflinks 1.721        
cufflinks 1.319        

0 Strain