Gene : Glyma.11G100800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR32010:SF6 - PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC Genomic Order:  1008
Name:  ? Glyma.11G100800 Secondary Identifier:  ? PAC:30530865
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G100800 0.5kb upstream 0.5kb upstream 4318 true Chr11: 7629148-7633465 Glycine max
Glyma.11G100800 0.5kb upstream 0.5kb upstream 500 false Chr11: 7632966-7633465 Glycine max
Glyma.11G100800 0.5kb downstream 0.5kb downstream 4318 true Chr11: 7628648-7632965 Glycine max
Glyma.11G100800 0.5kb downstream 0.5kb downstream 500 false Chr11: 7628648-7629147 Glycine max
Glyma.11G100800 1.0kb upstream 1.0kb upstream 4818 true Chr11: 7629148-7633965 Glycine max
Glyma.11G100800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 7632966-7633965 Glycine max
Glyma.11G100800 1.0kb downstream 1.0kb downstream 4818 true Chr11: 7628148-7632965 Glycine max
Glyma.11G100800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 7628148-7629147 Glycine max
Glyma.11G100800 2.0kb upstream 2.0kb upstream 5818 true Chr11: 7629148-7634965 Glycine max
Glyma.11G100800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 7632966-7634965 Glycine max
Glyma.11G100800 2.0kb downstream 2.0kb downstream 5818 true Chr11: 7627148-7632965 Glycine max
Glyma.11G100800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 7627148-7629147 Glycine max
Glyma.11G100800 5.0kb upstream 5.0kb upstream 8818 true Chr11: 7629148-7637965 Glycine max
Glyma.11G100800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 7632966-7637965 Glycine max
Glyma.11G100800 5.0kb downstream 5.0kb downstream 8818 true Chr11: 7624148-7632965 Glycine max
Glyma.11G100800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 7624148-7629147 Glycine max
Glyma.11G100800 10.0kb upstream 10.0kb upstream 13818 true Chr11: 7629148-7642965 Glycine max
Glyma.11G100800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 7632966-7642965 Glycine max
Glyma.11G100800 10.0kb downstream 10.0kb downstream 13818 true Chr11: 7619148-7632965 Glycine max
Glyma.11G100800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 7619148-7629147 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299617 5265 Fabidae View MSA
124062574 5270 Rosid View MSA
123745532 5271 Pentapetalae View MSA
122793353 5272 Eudicot View MSA
122042393 5273 Angiosperm View MSA
121345735 5274 Embryophyte View MSA
123424958 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.6622 0.0 77.3888 High High
cufflinks 16.0287 0.0 52.8744   High
cufflinks 3.08351 0.0 14.9122    
cufflinks 7.17963 0.0 26.2707    
cufflinks 1.24121 0.0 7.74505    
cufflinks 1.05657 0.0 6.95535   Low
cufflinks 3.79582 0.0 16.9426    
cufflinks 3.65624 0.0 16.5054    
cufflinks 0.701219 0.0 4.91876   Low
cufflinks 1.531        
cufflinks 0.022     Low Low
cufflinks 1.168        
cufflinks 0.11        
cufflinks 0.051     Low  
cufflinks 0.056        
cufflinks 9.31     High High
cufflinks 0.022     Low Low
cufflinks 1.705        
cufflinks 2.97        
cufflinks 10.579     High High
cufflinks 0.046     Low  
cufflinks 9.009     High High
cufflinks 6.876       High
cufflinks 0.063        
cufflinks 10.462     High High
cufflinks 0.049     Low  

0 Strain