Gene : Glyma.11G097900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE Genomic Order:  979
Name:  ? Glyma.11G097900 Secondary Identifier:  ? PAC:30531041
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G097900 0.5kb upstream 0.5kb upstream 2086 true Chr11: 7455618-7457703 Glycine max
Glyma.11G097900 0.5kb upstream 0.5kb upstream 500 false Chr11: 7455618-7456117 Glycine max
Glyma.11G097900 0.5kb downstream 0.5kb downstream 2086 true Chr11: 7456118-7458203 Glycine max
Glyma.11G097900 0.5kb downstream 0.5kb downstream 500 false Chr11: 7457704-7458203 Glycine max
Glyma.11G097900 1.0kb upstream 1.0kb upstream 2586 true Chr11: 7455118-7457703 Glycine max
Glyma.11G097900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 7455118-7456117 Glycine max
Glyma.11G097900 1.0kb downstream 1.0kb downstream 2586 true Chr11: 7456118-7458703 Glycine max
Glyma.11G097900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 7457704-7458703 Glycine max
Glyma.11G097900 2.0kb upstream 2.0kb upstream 3586 true Chr11: 7454118-7457703 Glycine max
Glyma.11G097900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 7454118-7456117 Glycine max
Glyma.11G097900 2.0kb downstream 2.0kb downstream 3586 true Chr11: 7456118-7459703 Glycine max
Glyma.11G097900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 7457704-7459703 Glycine max
Glyma.11G097900 5.0kb upstream 5.0kb upstream 6586 true Chr11: 7451118-7457703 Glycine max
Glyma.11G097900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 7451118-7456117 Glycine max
Glyma.11G097900 5.0kb downstream 5.0kb downstream 6586 true Chr11: 7456118-7462703 Glycine max
Glyma.11G097900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 7457704-7462703 Glycine max
Glyma.11G097900 10.0kb upstream 10.0kb upstream 11586 true Chr11: 7446118-7457703 Glycine max
Glyma.11G097900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 7446118-7456117 Glycine max
Glyma.11G097900 10.0kb downstream 10.0kb downstream 11586 true Chr11: 7456118-7467703 Glycine max
Glyma.11G097900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 7457704-7467703 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300331 5265 Fabidae View MSA
124063959 5270 Rosid View MSA
123736714 5271 Pentapetalae View MSA
122788702 5272 Eudicot View MSA
122042999 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.020097 0.0 0.0889556 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.015872 0.0 0.0718358 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low  
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.641       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.032     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.028     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain