Gene : Glyma.11G123500 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR11139:SF71 - SERINE/THREONINE-PROTEIN KINASE SMG1 Genomic Order:  1235
Name:  ? Glyma.11G123500 Secondary Identifier:  ? PAC:30528200
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G123500 0.5kb upstream 0.5kb upstream 16329 true Chr11: 9393681-9410009 Glycine max
Glyma.11G123500 0.5kb upstream 0.5kb upstream 500 false Chr11: 9409510-9410009 Glycine max
Glyma.11G123500 0.5kb downstream 0.5kb downstream 16329 true Chr11: 9393181-9409509 Glycine max
Glyma.11G123500 0.5kb downstream 0.5kb downstream 500 false Chr11: 9393181-9393680 Glycine max
Glyma.11G123500 1.0kb upstream 1.0kb upstream 16829 true Chr11: 9393681-9410509 Glycine max
Glyma.11G123500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 9409510-9410509 Glycine max
Glyma.11G123500 1.0kb downstream 1.0kb downstream 16829 true Chr11: 9392681-9409509 Glycine max
Glyma.11G123500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 9392681-9393680 Glycine max
Glyma.11G123500 2.0kb upstream 2.0kb upstream 17829 true Chr11: 9393681-9411509 Glycine max
Glyma.11G123500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 9409510-9411509 Glycine max
Glyma.11G123500 2.0kb downstream 2.0kb downstream 17829 true Chr11: 9391681-9409509 Glycine max
Glyma.11G123500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 9391681-9393680 Glycine max
Glyma.11G123500 5.0kb upstream 5.0kb upstream 20829 true Chr11: 9393681-9414509 Glycine max
Glyma.11G123500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 9409510-9414509 Glycine max
Glyma.11G123500 5.0kb downstream 5.0kb downstream 20829 true Chr11: 9388681-9409509 Glycine max
Glyma.11G123500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 9388681-9393680 Glycine max
Glyma.11G123500 10.0kb upstream 10.0kb upstream 25829 true Chr11: 9393681-9419509 Glycine max
Glyma.11G123500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 9409510-9419509 Glycine max
Glyma.11G123500 10.0kb downstream 10.0kb downstream 25829 true Chr11: 9383681-9409509 Glycine max
Glyma.11G123500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 9383681-9393680 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300926 5265 Fabidae View MSA
124050345 5270 Rosid View MSA
123740194 5271 Pentapetalae View MSA
122789167 5272 Eudicot View MSA
122046807 5273 Angiosperm View MSA
121348670 5274 Embryophyte View MSA
123425696 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.99867 0.0 20.3098    
cufflinks 3.66766 0.0 12.924    
cufflinks 5.48335 0.0 20.6472    
cufflinks 5.29587 0.0 19.6516    
cufflinks 3.3666 0.0 13.0551    
cufflinks 1.12954 0.0 3.59019   Low
cufflinks 4.9997 0.0 15.8112    
cufflinks 3.87748 0.0 13.7313    
cufflinks 4.26405 0.0 16.9045    
cufflinks 1.123        
cufflinks 0.352       Low
cufflinks 1.765        
cufflinks 1.214        
cufflinks 1.558        
cufflinks 1.099        
cufflinks 1.737        
cufflinks 0.709        
cufflinks 1.861        
cufflinks 1.97        
cufflinks 2.545       High
cufflinks 0.53       Low
cufflinks 2.558       High
cufflinks 1.559        
cufflinks 0.5       Low
cufflinks 2.294       High
cufflinks 0.51       Low

0 Strain