Gene : Glyma.11G124800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR31088:SF6 - MEMBRANE-ASSOCIATED PROTEIN VIPP1, CHLOROPLASTIC Genomic Order:  1248
Name:  ? Glyma.11G124800 Secondary Identifier:  ? PAC:30531573
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G124800 0.5kb upstream 0.5kb upstream 8119 true Chr11: 9478447-9486565 Glycine max
Glyma.11G124800 0.5kb upstream 0.5kb upstream 500 false Chr11: 9486066-9486565 Glycine max
Glyma.11G124800 0.5kb downstream 0.5kb downstream 8119 true Chr11: 9477947-9486065 Glycine max
Glyma.11G124800 0.5kb downstream 0.5kb downstream 500 false Chr11: 9477947-9478446 Glycine max
Glyma.11G124800 1.0kb upstream 1.0kb upstream 8619 true Chr11: 9478447-9487065 Glycine max
Glyma.11G124800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 9486066-9487065 Glycine max
Glyma.11G124800 1.0kb downstream 1.0kb downstream 8619 true Chr11: 9477447-9486065 Glycine max
Glyma.11G124800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 9477447-9478446 Glycine max
Glyma.11G124800 2.0kb upstream 2.0kb upstream 9619 true Chr11: 9478447-9488065 Glycine max
Glyma.11G124800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 9486066-9488065 Glycine max
Glyma.11G124800 2.0kb downstream 2.0kb downstream 9619 true Chr11: 9476447-9486065 Glycine max
Glyma.11G124800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 9476447-9478446 Glycine max
Glyma.11G124800 5.0kb upstream 5.0kb upstream 12619 true Chr11: 9478447-9491065 Glycine max
Glyma.11G124800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 9486066-9491065 Glycine max
Glyma.11G124800 5.0kb downstream 5.0kb downstream 12619 true Chr11: 9473447-9486065 Glycine max
Glyma.11G124800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 9473447-9478446 Glycine max
Glyma.11G124800 10.0kb upstream 10.0kb upstream 17619 true Chr11: 9478447-9496065 Glycine max
Glyma.11G124800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 9486066-9496065 Glycine max
Glyma.11G124800 10.0kb downstream 10.0kb downstream 17619 true Chr11: 9468447-9486065 Glycine max
Glyma.11G124800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 9468447-9478446 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302101 5265 Fabidae View MSA
124067961 5270 Rosid View MSA
123738548 5271 Pentapetalae View MSA
122792154 5272 Eudicot View MSA
122046010 5273 Angiosperm View MSA
121345792 5274 Embryophyte View MSA
123427031 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.1234 0.0 112.471 High High
cufflinks 19.7218 0.0 52.6198    
cufflinks 14.0273 0.0 37.7228    
cufflinks 11.1105 0.0 30.1993    
cufflinks 7.54973 0.0 21.1721    
cufflinks 6.85176 0.0 19.4329   Low
cufflinks 12.268 0.0 33.1963    
cufflinks 15.6385 0.0 41.8576    
cufflinks 7.03751 0.0 19.8748   Low
cufflinks 2.128        
cufflinks 0.709        
cufflinks 2.225        
cufflinks 1.063        
cufflinks 1.185        
cufflinks 0.733        
cufflinks 8.724     High High
cufflinks 0.866        
cufflinks 2.166        
cufflinks 2.849        
cufflinks 9.875     High High
cufflinks 0.757        
cufflinks 8.722     High High
cufflinks 7.125       High
cufflinks 0.549       Low
cufflinks 10.179     High High
cufflinks 0.583       Low

0 Strain