Gene : Glyma.11G120800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31566:SF0 - CYTOCHROME C BIOGENESIS PROTEIN CCS1, CHLOROPLASTIC Genomic Order:  1208
Name:  ? Glyma.11G120800 Secondary Identifier:  ? PAC:30528377
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G120800 0.5kb upstream 0.5kb upstream 5813 true Chr11: 9222434-9228246 Glycine max
Glyma.11G120800 0.5kb upstream 0.5kb upstream 500 false Chr11: 9222434-9222933 Glycine max
Glyma.11G120800 0.5kb downstream 0.5kb downstream 5813 true Chr11: 9222934-9228746 Glycine max
Glyma.11G120800 0.5kb downstream 0.5kb downstream 500 false Chr11: 9228247-9228746 Glycine max
Glyma.11G120800 1.0kb upstream 1.0kb upstream 6313 true Chr11: 9221934-9228246 Glycine max
Glyma.11G120800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 9221934-9222933 Glycine max
Glyma.11G120800 1.0kb downstream 1.0kb downstream 6313 true Chr11: 9222934-9229246 Glycine max
Glyma.11G120800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 9228247-9229246 Glycine max
Glyma.11G120800 2.0kb upstream 2.0kb upstream 7313 true Chr11: 9220934-9228246 Glycine max
Glyma.11G120800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 9220934-9222933 Glycine max
Glyma.11G120800 2.0kb downstream 2.0kb downstream 7313 true Chr11: 9222934-9230246 Glycine max
Glyma.11G120800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 9228247-9230246 Glycine max
Glyma.11G120800 5.0kb upstream 5.0kb upstream 10313 true Chr11: 9217934-9228246 Glycine max
Glyma.11G120800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 9217934-9222933 Glycine max
Glyma.11G120800 5.0kb downstream 5.0kb downstream 10313 true Chr11: 9222934-9233246 Glycine max
Glyma.11G120800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 9228247-9233246 Glycine max
Glyma.11G120800 10.0kb upstream 10.0kb upstream 15313 true Chr11: 9212934-9228246 Glycine max
Glyma.11G120800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 9212934-9222933 Glycine max
Glyma.11G120800 10.0kb downstream 10.0kb downstream 15313 true Chr11: 9222934-9238246 Glycine max
Glyma.11G120800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 9228247-9238246 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300920 5265 Fabidae View MSA
124068876 5270 Rosid View MSA
123740681 5271 Pentapetalae View MSA
122796764 5272 Eudicot View MSA
122043580 5273 Angiosperm View MSA
121347633 5274 Embryophyte View MSA
123425145 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.7592 0.0 148.639 High High
cufflinks 12.5351 0.0 46.1811    
cufflinks 9.88111 0.0 50.6033    
cufflinks 12.7727 0.0 52.4383    
cufflinks 1.32413 0.0 9.38728   Low
cufflinks 0.966538 0.0 18.071   Low
cufflinks 6.12478 0.0 32.8538    
cufflinks 10.5206 0.0 44.2458    
cufflinks 1.11402 0.0 9.05761   Low
cufflinks 2.753        
cufflinks 0.027     Low Low
cufflinks 3.843        
cufflinks 0.152        
cufflinks 0.136        
cufflinks 0.067        
cufflinks 9.039     High High
cufflinks 0.072        
cufflinks 5.826        
cufflinks 3.31        
cufflinks 13.743     High High
cufflinks 0.045     Low Low
cufflinks 12.588     High High
cufflinks 9.248     High High
cufflinks 0.04     Low Low
cufflinks 10.387     High High
cufflinks 0.05     Low Low

0 Strain