Gene : Glyma.11G110600 G. max Wm82.a2.v1
Defline:  (1 of 24) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1106
Name:  ? Glyma.11G110600 Secondary Identifier:  ? PAC:30528901
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G110600 0.5kb upstream 0.5kb upstream 9009 true Chr11: 8431333-8440341 Glycine max
Glyma.11G110600 0.5kb upstream 0.5kb upstream 500 false Chr11: 8439842-8440341 Glycine max
Glyma.11G110600 0.5kb downstream 0.5kb downstream 9009 true Chr11: 8430833-8439841 Glycine max
Glyma.11G110600 0.5kb downstream 0.5kb downstream 500 false Chr11: 8430833-8431332 Glycine max
Glyma.11G110600 1.0kb upstream 1.0kb upstream 9509 true Chr11: 8431333-8440841 Glycine max
Glyma.11G110600 1.0kb upstream 1.0kb upstream 1000 false Chr11: 8439842-8440841 Glycine max
Glyma.11G110600 1.0kb downstream 1.0kb downstream 9509 true Chr11: 8430333-8439841 Glycine max
Glyma.11G110600 1.0kb downstream 1.0kb downstream 1000 false Chr11: 8430333-8431332 Glycine max
Glyma.11G110600 2.0kb upstream 2.0kb upstream 10509 true Chr11: 8431333-8441841 Glycine max
Glyma.11G110600 2.0kb upstream 2.0kb upstream 2000 false Chr11: 8439842-8441841 Glycine max
Glyma.11G110600 2.0kb downstream 2.0kb downstream 10509 true Chr11: 8429333-8439841 Glycine max
Glyma.11G110600 2.0kb downstream 2.0kb downstream 2000 false Chr11: 8429333-8431332 Glycine max
Glyma.11G110600 5.0kb upstream 5.0kb upstream 13509 true Chr11: 8431333-8444841 Glycine max
Glyma.11G110600 5.0kb upstream 5.0kb upstream 5000 false Chr11: 8439842-8444841 Glycine max
Glyma.11G110600 5.0kb downstream 5.0kb downstream 13509 true Chr11: 8426333-8439841 Glycine max
Glyma.11G110600 5.0kb downstream 5.0kb downstream 5000 false Chr11: 8426333-8431332 Glycine max
Glyma.11G110600 10.0kb upstream 10.0kb upstream 18509 true Chr11: 8431333-8449841 Glycine max
Glyma.11G110600 10.0kb upstream 10.0kb upstream 10000 false Chr11: 8439842-8449841 Glycine max
Glyma.11G110600 10.0kb downstream 10.0kb downstream 18509 true Chr11: 8421333-8439841 Glycine max
Glyma.11G110600 10.0kb downstream 10.0kb downstream 10000 false Chr11: 8421333-8431332 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309980 5265 Fabidae View MSA
124060675 5270 Rosid View MSA
123748612 5271 Pentapetalae View MSA
122791093 5272 Eudicot View MSA
122046985 5273 Angiosperm View MSA
121347235 5274 Embryophyte View MSA
123380515 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.58054 0.0 15.1168   High
cufflinks 7.84082 0.0 20.9634   High
cufflinks 3.39584 0.0 9.53752    
cufflinks 2.51039 0.0 7.31903    
cufflinks 2.5062 0.0 7.33525    
cufflinks 1.14468 0.0 3.7325   Low
cufflinks 3.02218 0.0 8.65557    
cufflinks 2.57906 0.0 7.50333    
cufflinks 1.75897 0.0 5.39801    
cufflinks 0.928        
cufflinks 0.063       Low
cufflinks 2.002        
cufflinks 0.544        
cufflinks 0.622        
cufflinks 0.12       Low
cufflinks 4.457       High
cufflinks 0.275        
cufflinks 2.123        
cufflinks 3.341        
cufflinks 5.047       High
cufflinks 0.12       Low
cufflinks 5.231       High
cufflinks 5.759       High
cufflinks 0.098       Low
cufflinks 4.838       High
cufflinks 0.186        

0 Strain