Gene : Glyma.11G111300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31576:SF2 - TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B Genomic Order:  1113
Name:  ? Glyma.11G111300 Secondary Identifier:  ? PAC:30530571
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G111300 0.5kb upstream 0.5kb upstream 5235 true Chr11: 8489598-8494832 Glycine max
Glyma.11G111300 0.5kb upstream 0.5kb upstream 500 false Chr11: 8489598-8490097 Glycine max
Glyma.11G111300 0.5kb downstream 0.5kb downstream 5235 true Chr11: 8490098-8495332 Glycine max
Glyma.11G111300 0.5kb downstream 0.5kb downstream 500 false Chr11: 8494833-8495332 Glycine max
Glyma.11G111300 1.0kb upstream 1.0kb upstream 5735 true Chr11: 8489098-8494832 Glycine max
Glyma.11G111300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 8489098-8490097 Glycine max
Glyma.11G111300 1.0kb downstream 1.0kb downstream 5735 true Chr11: 8490098-8495832 Glycine max
Glyma.11G111300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 8494833-8495832 Glycine max
Glyma.11G111300 2.0kb upstream 2.0kb upstream 6735 true Chr11: 8488098-8494832 Glycine max
Glyma.11G111300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 8488098-8490097 Glycine max
Glyma.11G111300 2.0kb downstream 2.0kb downstream 6735 true Chr11: 8490098-8496832 Glycine max
Glyma.11G111300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 8494833-8496832 Glycine max
Glyma.11G111300 5.0kb upstream 5.0kb upstream 9735 true Chr11: 8485098-8494832 Glycine max
Glyma.11G111300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 8485098-8490097 Glycine max
Glyma.11G111300 5.0kb downstream 5.0kb downstream 9735 true Chr11: 8490098-8499832 Glycine max
Glyma.11G111300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 8494833-8499832 Glycine max
Glyma.11G111300 10.0kb upstream 10.0kb upstream 14735 true Chr11: 8480098-8494832 Glycine max
Glyma.11G111300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 8480098-8490097 Glycine max
Glyma.11G111300 10.0kb downstream 10.0kb downstream 14735 true Chr11: 8490098-8504832 Glycine max
Glyma.11G111300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 8494833-8504832 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306407 5265 Fabidae View MSA
124065937 5270 Rosid View MSA
123742102 5271 Pentapetalae View MSA
122796533 5272 Eudicot View MSA
122050673 5273 Angiosperm View MSA
121345414 5274 Embryophyte View MSA
123427215 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.91573 0.0 273.519    
cufflinks 4.96967 0.0 41.5307    
cufflinks 3.40965 0.0 19.2745    
cufflinks 3.92296 0.0 60.3736    
cufflinks 3.3042 0.0 12.6412    
cufflinks 2.99408 0.0 10.542   Low
cufflinks 6.36565 0.0 79.9604   High
cufflinks 2.96508 0.0 22.1716   Low
cufflinks 3.98904 0.0 13.0574    
cufflinks 1.471       Low
cufflinks 2.483        
cufflinks 2.398        
cufflinks 1.731       Low
cufflinks 2.325        
cufflinks 1.905       Low
cufflinks 3.838       High
cufflinks 2.431        
cufflinks 2.564        
cufflinks 3.009        
cufflinks 3.724       High
cufflinks 2.408        
cufflinks 3.646       High
cufflinks 2.928        
cufflinks 2.23        
cufflinks 3.738       High
cufflinks 2.295        

0 Strain