Gene : Glyma.11G171200 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR24098:SF4 - ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-RELATED Genomic Order:  1712
Name:  ? Glyma.11G171200 Secondary Identifier:  ? PAC:30528794
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G171200 0.5kb upstream 0.5kb upstream 9897 true Chr11: 18474619-18484515 Glycine max
Glyma.11G171200 0.5kb upstream 0.5kb upstream 500 false Chr11: 18474619-18475118 Glycine max
Glyma.11G171200 0.5kb downstream 0.5kb downstream 9897 true Chr11: 18475119-18485015 Glycine max
Glyma.11G171200 0.5kb downstream 0.5kb downstream 500 false Chr11: 18484516-18485015 Glycine max
Glyma.11G171200 1.0kb upstream 1.0kb upstream 10397 true Chr11: 18474119-18484515 Glycine max
Glyma.11G171200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 18474119-18475118 Glycine max
Glyma.11G171200 1.0kb downstream 1.0kb downstream 10397 true Chr11: 18475119-18485515 Glycine max
Glyma.11G171200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 18484516-18485515 Glycine max
Glyma.11G171200 2.0kb upstream 2.0kb upstream 11397 true Chr11: 18473119-18484515 Glycine max
Glyma.11G171200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 18473119-18475118 Glycine max
Glyma.11G171200 2.0kb downstream 2.0kb downstream 11397 true Chr11: 18475119-18486515 Glycine max
Glyma.11G171200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 18484516-18486515 Glycine max
Glyma.11G171200 5.0kb upstream 5.0kb upstream 14397 true Chr11: 18470119-18484515 Glycine max
Glyma.11G171200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 18470119-18475118 Glycine max
Glyma.11G171200 5.0kb downstream 5.0kb downstream 14397 true Chr11: 18475119-18489515 Glycine max
Glyma.11G171200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 18484516-18489515 Glycine max
Glyma.11G171200 10.0kb upstream 10.0kb upstream 19397 true Chr11: 18465119-18484515 Glycine max
Glyma.11G171200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 18465119-18475118 Glycine max
Glyma.11G171200 10.0kb downstream 10.0kb downstream 19397 true Chr11: 18475119-18494515 Glycine max
Glyma.11G171200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 18484516-18494515 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312419 5265 Fabidae View MSA
124072957 5270 Rosid View MSA
123753640 5271 Pentapetalae View MSA
122796648 5272 Eudicot View MSA
122050898 5273 Angiosperm View MSA
121351041 5274 Embryophyte View MSA
123425735 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0303347 0.0 0.121656 Low Low
cufflinks 0.585644 0.0 2.31547    
cufflinks 0.186701 0.0 0.907473 Low  
cufflinks 0.434179 0.0 2.44133    
cufflinks 0.33758 0.0 1.97004    
cufflinks 0.172936 0.0 1.09707 Low  
cufflinks 1.11515 0.0 3.73096   High
cufflinks 0.0895155 0.0 0.453068 Low  
cufflinks 0.241035 0.0 1.47742 Low  
cufflinks 0.037     Low  
cufflinks 0.044     Low  
cufflinks 0.086     Low  
cufflinks 0.112       High
cufflinks 0.097       High
cufflinks 0.013     Low Low
cufflinks 0.032     Low  
cufflinks 0.031     Low  
cufflinks 0.11     Low High
cufflinks 0.223       High
cufflinks 0.021     Low Low
cufflinks 0.036     Low  
cufflinks 0.031     Low  
cufflinks 0.022     Low  
cufflinks 0.037     Low  
cufflinks 0.027     Low  
cufflinks 0.058     Low  

0 Strain