Gene : Glyma.11G160100 G. max Wm82.a2.v1
Defline:  (1 of 3) KOG3369 - Transport protein particle (TRAPP) complex subunit Genomic Order:  1601
Name:  ? Glyma.11G160100 Secondary Identifier:  ? PAC:30531080
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G160100 0.5kb upstream 0.5kb upstream 3411 true Chr11: 14651236-14654646 Glycine max
Glyma.11G160100 0.5kb upstream 0.5kb upstream 500 false Chr11: 14654147-14654646 Glycine max
Glyma.11G160100 0.5kb downstream 0.5kb downstream 3411 true Chr11: 14650736-14654146 Glycine max
Glyma.11G160100 0.5kb downstream 0.5kb downstream 500 false Chr11: 14650736-14651235 Glycine max
Glyma.11G160100 1.0kb upstream 1.0kb upstream 3911 true Chr11: 14651236-14655146 Glycine max
Glyma.11G160100 1.0kb upstream 1.0kb upstream 1000 false Chr11: 14654147-14655146 Glycine max
Glyma.11G160100 1.0kb downstream 1.0kb downstream 3911 true Chr11: 14650236-14654146 Glycine max
Glyma.11G160100 1.0kb downstream 1.0kb downstream 1000 false Chr11: 14650236-14651235 Glycine max
Glyma.11G160100 2.0kb upstream 2.0kb upstream 4911 true Chr11: 14651236-14656146 Glycine max
Glyma.11G160100 2.0kb upstream 2.0kb upstream 2000 false Chr11: 14654147-14656146 Glycine max
Glyma.11G160100 2.0kb downstream 2.0kb downstream 4911 true Chr11: 14649236-14654146 Glycine max
Glyma.11G160100 2.0kb downstream 2.0kb downstream 2000 false Chr11: 14649236-14651235 Glycine max
Glyma.11G160100 5.0kb upstream 5.0kb upstream 7911 true Chr11: 14651236-14659146 Glycine max
Glyma.11G160100 5.0kb upstream 5.0kb upstream 5000 false Chr11: 14654147-14659146 Glycine max
Glyma.11G160100 5.0kb downstream 5.0kb downstream 7911 true Chr11: 14646236-14654146 Glycine max
Glyma.11G160100 5.0kb downstream 5.0kb downstream 5000 false Chr11: 14646236-14651235 Glycine max
Glyma.11G160100 10.0kb upstream 10.0kb upstream 12911 true Chr11: 14651236-14664146 Glycine max
Glyma.11G160100 10.0kb upstream 10.0kb upstream 10000 false Chr11: 14654147-14664146 Glycine max
Glyma.11G160100 10.0kb downstream 10.0kb downstream 12911 true Chr11: 14641236-14654146 Glycine max
Glyma.11G160100 10.0kb downstream 10.0kb downstream 10000 false Chr11: 14641236-14651235 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312877 5265 Fabidae View MSA
124062773 5270 Rosid View MSA
123740967 5271 Pentapetalae View MSA
122786625 5272 Eudicot View MSA
122043161 5273 Angiosperm View MSA
121347078 5274 Embryophyte View MSA
123424121 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.26086 0.0 25.4337   Low
cufflinks 11.8043 0.0 50.8763    
cufflinks 8.87427 0.0 35.4248   Low
cufflinks 15.3664 0.0 61.7214    
cufflinks 14.487 0.0 49.3265    
cufflinks 21.2694 0.0 80.4632   High
cufflinks 14.0048 0.0 58.0404    
cufflinks 16.1306 0.0 63.7049    
cufflinks 13.8203 0.0 56.896    
cufflinks 2.007       High
cufflinks 0.917       Low
cufflinks 1.216        
cufflinks 2.14       High
cufflinks 2.169       High
cufflinks 0.706       Low
cufflinks 1.303        
cufflinks 1.033        
cufflinks 1.962       High
cufflinks 1.373        
cufflinks 1.106        
cufflinks 0.914       Low
cufflinks 1.262        
cufflinks 1.276        
cufflinks 1.278        
cufflinks 1.102        
cufflinks 1.262        

0 Strain