Gene : Glyma.11G162700 G. max Wm82.a2.v1
Defline:  (1 of 701) PF01535 - PPR repeat (PPR) Genomic Order:  1627
Name:  ? Glyma.11G162700 Secondary Identifier:  ? PAC:30531457
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G162700 0.5kb upstream 0.5kb upstream 2615 true Chr11: 15201054-15203668 Glycine max
Glyma.11G162700 0.5kb upstream 0.5kb upstream 500 false Chr11: 15203169-15203668 Glycine max
Glyma.11G162700 0.5kb downstream 0.5kb downstream 2615 true Chr11: 15200554-15203168 Glycine max
Glyma.11G162700 0.5kb downstream 0.5kb downstream 500 false Chr11: 15200554-15201053 Glycine max
Glyma.11G162700 1.0kb upstream 1.0kb upstream 3115 true Chr11: 15201054-15204168 Glycine max
Glyma.11G162700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 15203169-15204168 Glycine max
Glyma.11G162700 1.0kb downstream 1.0kb downstream 3115 true Chr11: 15200054-15203168 Glycine max
Glyma.11G162700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 15200054-15201053 Glycine max
Glyma.11G162700 2.0kb upstream 2.0kb upstream 4115 true Chr11: 15201054-15205168 Glycine max
Glyma.11G162700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 15203169-15205168 Glycine max
Glyma.11G162700 2.0kb downstream 2.0kb downstream 4115 true Chr11: 15199054-15203168 Glycine max
Glyma.11G162700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 15199054-15201053 Glycine max
Glyma.11G162700 5.0kb upstream 5.0kb upstream 7115 true Chr11: 15201054-15208168 Glycine max
Glyma.11G162700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 15203169-15208168 Glycine max
Glyma.11G162700 5.0kb downstream 5.0kb downstream 7115 true Chr11: 15196054-15203168 Glycine max
Glyma.11G162700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 15196054-15201053 Glycine max
Glyma.11G162700 10.0kb upstream 10.0kb upstream 12115 true Chr11: 15201054-15213168 Glycine max
Glyma.11G162700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 15203169-15213168 Glycine max
Glyma.11G162700 10.0kb downstream 10.0kb downstream 12115 true Chr11: 15191054-15203168 Glycine max
Glyma.11G162700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 15191054-15201053 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122246614 5265 Fabidae Singleton cluster - no MSA
124051517 5270 Rosid View MSA
123741798 5271 Pentapetalae View MSA
122789514 5272 Eudicot View MSA
122049493 5273 Angiosperm View MSA
121311435 5274 Embryophyte View MSA
123348731 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.99945 0.0 6.38591   High
cufflinks 0.69426 0.0 2.48296    
cufflinks 0.656734 0.0 2.35387    
cufflinks 1.02138 0.0 3.54315    
cufflinks 0.842531 0.0 2.97207    
cufflinks 0.294157 0.0 1.10369   Low
cufflinks 1.16186 0.0 3.97589    
cufflinks 0.571377 0.0 2.07025    
cufflinks 0.670483 0.0 2.40279    
cufflinks 0.282       Low
cufflinks 0.295       Low
cufflinks 1.074       High
cufflinks 0.872        
cufflinks 1.258       High
cufflinks 0.441        
cufflinks 0.615        
cufflinks 0.764        
cufflinks 0.877        
cufflinks 0.996       High
cufflinks 0.459        
cufflinks 0.358       Low
cufflinks 0.657        
cufflinks 1.051       High
cufflinks 0.408        
cufflinks 0.691        
cufflinks 0.506        

0 Strain