Gene : Glyma.11G142400 G. max Wm82.a2.v1
Defline:  (1 of 40) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  1424
Name:  ? Glyma.11G142400 Secondary Identifier:  ? PAC:30527947
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G142400 0.5kb upstream 0.5kb upstream 4070 true Chr11: 10860992-10865061 Glycine max
Glyma.11G142400 0.5kb upstream 0.5kb upstream 500 false Chr11: 10864562-10865061 Glycine max
Glyma.11G142400 0.5kb downstream 0.5kb downstream 4070 true Chr11: 10860492-10864561 Glycine max
Glyma.11G142400 0.5kb downstream 0.5kb downstream 500 false Chr11: 10860492-10860991 Glycine max
Glyma.11G142400 1.0kb upstream 1.0kb upstream 4570 true Chr11: 10860992-10865561 Glycine max
Glyma.11G142400 1.0kb upstream 1.0kb upstream 1000 false Chr11: 10864562-10865561 Glycine max
Glyma.11G142400 1.0kb downstream 1.0kb downstream 4570 true Chr11: 10859992-10864561 Glycine max
Glyma.11G142400 1.0kb downstream 1.0kb downstream 1000 false Chr11: 10859992-10860991 Glycine max
Glyma.11G142400 2.0kb upstream 2.0kb upstream 5570 true Chr11: 10860992-10866561 Glycine max
Glyma.11G142400 2.0kb upstream 2.0kb upstream 2000 false Chr11: 10864562-10866561 Glycine max
Glyma.11G142400 2.0kb downstream 2.0kb downstream 5570 true Chr11: 10858992-10864561 Glycine max
Glyma.11G142400 2.0kb downstream 2.0kb downstream 2000 false Chr11: 10858992-10860991 Glycine max
Glyma.11G142400 5.0kb upstream 5.0kb upstream 8570 true Chr11: 10860992-10869561 Glycine max
Glyma.11G142400 5.0kb upstream 5.0kb upstream 5000 false Chr11: 10864562-10869561 Glycine max
Glyma.11G142400 5.0kb downstream 5.0kb downstream 8570 true Chr11: 10855992-10864561 Glycine max
Glyma.11G142400 5.0kb downstream 5.0kb downstream 5000 false Chr11: 10855992-10860991 Glycine max
Glyma.11G142400 10.0kb upstream 10.0kb upstream 13570 true Chr11: 10860992-10874561 Glycine max
Glyma.11G142400 10.0kb upstream 10.0kb upstream 10000 false Chr11: 10864562-10874561 Glycine max
Glyma.11G142400 10.0kb downstream 10.0kb downstream 13570 true Chr11: 10850992-10864561 Glycine max
Glyma.11G142400 10.0kb downstream 10.0kb downstream 10000 false Chr11: 10850992-10860991 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309449 5265 Fabidae View MSA
124065450 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.6038 0.0 26.7536    
cufflinks 11.1567 0.0 39.743    
cufflinks 17.6904 0.0 62.743   High
cufflinks 10.4189 0.0 31.6588    
cufflinks 5.40768 0.0 18.4993   Low
cufflinks 8.64548 0.0 26.8207    
cufflinks 9.32484 0.0 28.862    
cufflinks 9.3416 0.0 33.6299    
cufflinks 7.77702 0.0 28.9678    
cufflinks 1.707        
cufflinks 2.149        
cufflinks 4.26       High
cufflinks 1.673        
cufflinks 1.383       Low
cufflinks 1.493       Low
cufflinks 3.729        
cufflinks 1.016       Low
cufflinks 3.364        
cufflinks 3.22        
cufflinks 4.644       High
cufflinks 2.064        
cufflinks 4.46       High
cufflinks 3.482        
cufflinks 2.926        
cufflinks 4.131       High
cufflinks 1.515       Low

0 Strain