Gene : Glyma.11G195900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Genomic Order:  1959
Name:  ? Glyma.11G195900 Secondary Identifier:  ? PAC:30530083
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Ontology Annotation Displayer

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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G195900 0.5kb upstream 0.5kb upstream 4436 true Chr11: 26969808-26974243 Glycine max
Glyma.11G195900 0.5kb upstream 0.5kb upstream 500 false Chr11: 26973744-26974243 Glycine max
Glyma.11G195900 0.5kb downstream 0.5kb downstream 4436 true Chr11: 26969308-26973743 Glycine max
Glyma.11G195900 0.5kb downstream 0.5kb downstream 500 false Chr11: 26969308-26969807 Glycine max
Glyma.11G195900 1.0kb upstream 1.0kb upstream 4936 true Chr11: 26969808-26974743 Glycine max
Glyma.11G195900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 26973744-26974743 Glycine max
Glyma.11G195900 1.0kb downstream 1.0kb downstream 4936 true Chr11: 26968808-26973743 Glycine max
Glyma.11G195900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 26968808-26969807 Glycine max
Glyma.11G195900 2.0kb upstream 2.0kb upstream 5936 true Chr11: 26969808-26975743 Glycine max
Glyma.11G195900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 26973744-26975743 Glycine max
Glyma.11G195900 2.0kb downstream 2.0kb downstream 5936 true Chr11: 26967808-26973743 Glycine max
Glyma.11G195900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 26967808-26969807 Glycine max
Glyma.11G195900 5.0kb upstream 5.0kb upstream 8936 true Chr11: 26969808-26978743 Glycine max
Glyma.11G195900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 26973744-26978743 Glycine max
Glyma.11G195900 5.0kb downstream 5.0kb downstream 8936 true Chr11: 26964808-26973743 Glycine max
Glyma.11G195900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 26964808-26969807 Glycine max
Glyma.11G195900 10.0kb upstream 10.0kb upstream 13936 true Chr11: 26969808-26983743 Glycine max
Glyma.11G195900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 26973744-26983743 Glycine max
Glyma.11G195900 10.0kb downstream 10.0kb downstream 13936 true Chr11: 26959808-26973743 Glycine max
Glyma.11G195900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 26959808-26969807 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122246765 5265 Fabidae Singleton cluster - no MSA
124066772 5270 Rosid View MSA
123747305 5271 Pentapetalae View MSA
122795365 5272 Eudicot View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 115.031 0.0 760.231 High High
cufflinks 56.7492 0.0 264.935 High  
cufflinks 16.8129 0.0 59.283   Low
cufflinks 55.3075 0.0 255.182 High  
cufflinks 46.5878 0.0 205.073 High  
cufflinks 24.9677 0.0 94.6381 High  
cufflinks 56.1481 0.0 260.257 High  
cufflinks 28.6562 0.0 109.576 High  
cufflinks 30.5114 0.0 118.034 High  
cufflinks 8.1     High  
cufflinks 1.725       Low
cufflinks 11.264     High  
cufflinks 10.447     High  
cufflinks 13.243     High  
cufflinks 1.97       Low
cufflinks 29.195     High High
cufflinks 3.127        
cufflinks 12.404     High  
cufflinks 17.58     High  
cufflinks 22.814     High  
cufflinks 1.669       Low
cufflinks 21.067     High  
cufflinks 32.885     High High
cufflinks 1.233       Low
cufflinks 27.142     High High
cufflinks 1.838       Low

0 Strain