Gene : Glyma.11G197500 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11771:SF38 - LIPOXYGENASE 3, CHLOROPLASTIC-RELATED Genomic Order:  1975
Name:  ? Glyma.11G197500 Secondary Identifier:  ? PAC:30528995
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G197500 0.5kb upstream 0.5kb upstream 3724 true Chr11: 27391425-27395148 Glycine max
Glyma.11G197500 0.5kb upstream 0.5kb upstream 500 false Chr11: 27391425-27391924 Glycine max
Glyma.11G197500 0.5kb downstream 0.5kb downstream 3724 true Chr11: 27391925-27395648 Glycine max
Glyma.11G197500 0.5kb downstream 0.5kb downstream 500 false Chr11: 27395149-27395648 Glycine max
Glyma.11G197500 1.0kb upstream 1.0kb upstream 4224 true Chr11: 27390925-27395148 Glycine max
Glyma.11G197500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 27390925-27391924 Glycine max
Glyma.11G197500 1.0kb downstream 1.0kb downstream 4224 true Chr11: 27391925-27396148 Glycine max
Glyma.11G197500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 27395149-27396148 Glycine max
Glyma.11G197500 2.0kb upstream 2.0kb upstream 5224 true Chr11: 27389925-27395148 Glycine max
Glyma.11G197500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 27389925-27391924 Glycine max
Glyma.11G197500 2.0kb downstream 2.0kb downstream 5224 true Chr11: 27391925-27397148 Glycine max
Glyma.11G197500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 27395149-27397148 Glycine max
Glyma.11G197500 5.0kb upstream 5.0kb upstream 8224 true Chr11: 27386925-27395148 Glycine max
Glyma.11G197500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 27386925-27391924 Glycine max
Glyma.11G197500 5.0kb downstream 5.0kb downstream 8224 true Chr11: 27391925-27400148 Glycine max
Glyma.11G197500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 27395149-27400148 Glycine max
Glyma.11G197500 10.0kb upstream 10.0kb upstream 13224 true Chr11: 27381925-27395148 Glycine max
Glyma.11G197500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 27381925-27391924 Glycine max
Glyma.11G197500 10.0kb downstream 10.0kb downstream 13224 true Chr11: 27391925-27405148 Glycine max
Glyma.11G197500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 27395149-27405148 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122246917 5265 Fabidae Singleton cluster - no MSA
124073916 5270 Rosid View MSA
123628465 5271 Pentapetalae View MSA
122662739 5272 Eudicot View MSA
122049504 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.506193 0.0 3.21908    
cufflinks 1.26646 0.0 7.07407    
cufflinks 0.261591 0.0 1.85077   Low
cufflinks 0.736869 0.0 4.48792    
cufflinks 5.15625 0.0 19.4613   High
cufflinks 6.3077 0.0 24.2911   High
cufflinks 2.31519 0.0 11.2993    
cufflinks 0.923731 0.0 5.44027    
cufflinks 2.78531 0.0 12.7735    
cufflinks 0.218        
cufflinks 0.374        
cufflinks 0.313        
cufflinks 1.223       High
cufflinks 1.583       High
cufflinks 3.437       High
cufflinks 0.06     Low Low
cufflinks 0.12        
cufflinks 0.236        
cufflinks 0.278        
cufflinks 0.036     Low Low
cufflinks 0.388        
cufflinks 0.062     Low Low
cufflinks 0.098     Low  
cufflinks 0.296        
cufflinks 0.074     Low  
cufflinks 0.283        

0 Strain