Gene : Glyma.11G199300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31194//PTHR31194:SF6 - SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR Genomic Order:  1993
Name:  ? Glyma.11G199300 Secondary Identifier:  ? PAC:30529085
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G199300 0.5kb upstream 0.5kb upstream 1319 true Chr11: 27753469-27754787 Glycine max
Glyma.11G199300 0.5kb upstream 0.5kb upstream 500 false Chr11: 27754288-27754787 Glycine max
Glyma.11G199300 0.5kb downstream 0.5kb downstream 1319 true Chr11: 27752969-27754287 Glycine max
Glyma.11G199300 0.5kb downstream 0.5kb downstream 500 false Chr11: 27752969-27753468 Glycine max
Glyma.11G199300 1.0kb upstream 1.0kb upstream 1819 true Chr11: 27753469-27755287 Glycine max
Glyma.11G199300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 27754288-27755287 Glycine max
Glyma.11G199300 1.0kb downstream 1.0kb downstream 1819 true Chr11: 27752469-27754287 Glycine max
Glyma.11G199300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 27752469-27753468 Glycine max
Glyma.11G199300 2.0kb upstream 2.0kb upstream 2819 true Chr11: 27753469-27756287 Glycine max
Glyma.11G199300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 27754288-27756287 Glycine max
Glyma.11G199300 2.0kb downstream 2.0kb downstream 2819 true Chr11: 27751469-27754287 Glycine max
Glyma.11G199300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 27751469-27753468 Glycine max
Glyma.11G199300 5.0kb upstream 5.0kb upstream 5819 true Chr11: 27753469-27759287 Glycine max
Glyma.11G199300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 27754288-27759287 Glycine max
Glyma.11G199300 5.0kb downstream 5.0kb downstream 5819 true Chr11: 27748469-27754287 Glycine max
Glyma.11G199300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 27748469-27753468 Glycine max
Glyma.11G199300 10.0kb upstream 10.0kb upstream 10819 true Chr11: 27753469-27764287 Glycine max
Glyma.11G199300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 27754288-27764287 Glycine max
Glyma.11G199300 10.0kb downstream 10.0kb downstream 10819 true Chr11: 27743469-27754287 Glycine max
Glyma.11G199300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 27743469-27753468 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296641 5265 Fabidae View MSA
124071112 5270 Rosid View MSA
123744943 5271 Pentapetalae View MSA
122797737 5272 Eudicot View MSA
122048577 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.9636 0.0 31.9362   High
cufflinks 4.85976 0.0 15.975    
cufflinks 4.12731 0.0 14.0271    
cufflinks 6.20173 0.0 19.6768    
cufflinks 3.29271 0.0 11.1745    
cufflinks 1.20717 0.0 4.44918   Low
cufflinks 0.743004 0.0 2.79968   Low
cufflinks 3.46396 0.0 11.8133    
cufflinks 3.43514 0.0 11.6952    
cufflinks 9.754     High High
cufflinks 0.494       Low
cufflinks 9.487     High High
cufflinks 0.71       Low
cufflinks 0.437       Low
cufflinks 0.715       Low
cufflinks 4.786        
cufflinks 4.558        
cufflinks 10.009     High High
cufflinks 6.161        
cufflinks 3.809        
cufflinks 0.907        
cufflinks 5.956        
cufflinks 9.771     High High
cufflinks 1.486        
cufflinks 3.53        
cufflinks 1.479        

0 Strain