Gene : Glyma.11G200100 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR32370:SF17 - ROOT PHOTOTROPISM PROTEIN 2 Genomic Order:  2001
Name:  ? Glyma.11G200100 Secondary Identifier:  ? PAC:30530745
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G200100 0.5kb upstream 0.5kb upstream 1604 true Chr11: 27880234-27881837 Glycine max
Glyma.11G200100 0.5kb upstream 0.5kb upstream 500 false Chr11: 27881338-27881837 Glycine max
Glyma.11G200100 0.5kb downstream 0.5kb downstream 1604 true Chr11: 27879734-27881337 Glycine max
Glyma.11G200100 0.5kb downstream 0.5kb downstream 500 false Chr11: 27879734-27880233 Glycine max
Glyma.11G200100 1.0kb upstream 1.0kb upstream 2104 true Chr11: 27880234-27882337 Glycine max
Glyma.11G200100 1.0kb upstream 1.0kb upstream 1000 false Chr11: 27881338-27882337 Glycine max
Glyma.11G200100 1.0kb downstream 1.0kb downstream 2104 true Chr11: 27879234-27881337 Glycine max
Glyma.11G200100 1.0kb downstream 1.0kb downstream 1000 false Chr11: 27879234-27880233 Glycine max
Glyma.11G200100 2.0kb upstream 2.0kb upstream 3104 true Chr11: 27880234-27883337 Glycine max
Glyma.11G200100 2.0kb upstream 2.0kb upstream 2000 false Chr11: 27881338-27883337 Glycine max
Glyma.11G200100 2.0kb downstream 2.0kb downstream 3104 true Chr11: 27878234-27881337 Glycine max
Glyma.11G200100 2.0kb downstream 2.0kb downstream 2000 false Chr11: 27878234-27880233 Glycine max
Glyma.11G200100 5.0kb upstream 5.0kb upstream 6104 true Chr11: 27880234-27886337 Glycine max
Glyma.11G200100 5.0kb upstream 5.0kb upstream 5000 false Chr11: 27881338-27886337 Glycine max
Glyma.11G200100 5.0kb downstream 5.0kb downstream 6104 true Chr11: 27875234-27881337 Glycine max
Glyma.11G200100 5.0kb downstream 5.0kb downstream 5000 false Chr11: 27875234-27880233 Glycine max
Glyma.11G200100 10.0kb upstream 10.0kb upstream 11104 true Chr11: 27880234-27891337 Glycine max
Glyma.11G200100 10.0kb upstream 10.0kb upstream 10000 false Chr11: 27881338-27891337 Glycine max
Glyma.11G200100 10.0kb downstream 10.0kb downstream 11104 true Chr11: 27870234-27881337 Glycine max
Glyma.11G200100 10.0kb downstream 10.0kb downstream 10000 false Chr11: 27870234-27880233 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312891 5265 Fabidae View MSA
124038508 5270 Rosid View MSA
123752863 5271 Pentapetalae View MSA
122774828 5272 Eudicot View MSA
122051145 5273 Angiosperm View MSA
121347829 5274 Embryophyte View MSA
123380647 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.601 0.0 52.8778    
cufflinks 10.1526 0.0 28.9592    
cufflinks 33.4801 0.0 89.3208 High High
cufflinks 15.5194 0.0 42.5248    
cufflinks 0.963818 0.0 3.53578   Low
cufflinks 1.83176 0.0 6.45126    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 7.80542 0.0 23.0002    
cufflinks 1.59506 0.0 5.68173   Low
cufflinks 10.731     High  
cufflinks 1.129        
cufflinks 34.187     High High
cufflinks 0.965        
cufflinks 0.181       Low
cufflinks 0.17       Low
cufflinks 24.432     High High
cufflinks 0.476       Low
cufflinks 13.717     High  
cufflinks 4.309        
cufflinks 12.335     High  
cufflinks 1.916        
cufflinks 13.187     High  
cufflinks 5.839        
cufflinks 1.169        
cufflinks 21.963     High High
cufflinks 0.953        

0 Strain