Gene : Glyma.11G175400 G. max Wm82.a2.v1
Defline:  (1 of 6) KOG2401 - Predicted MutS-related protein involved in mismatch repair Genomic Order:  1754
Name:  ? Glyma.11G175400 Secondary Identifier:  ? PAC:30528060
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G175400 0.5kb upstream 0.5kb upstream 6218 true Chr11: 19253746-19259963 Glycine max
Glyma.11G175400 0.5kb upstream 0.5kb upstream 500 false Chr11: 19259464-19259963 Glycine max
Glyma.11G175400 0.5kb downstream 0.5kb downstream 6218 true Chr11: 19253246-19259463 Glycine max
Glyma.11G175400 0.5kb downstream 0.5kb downstream 500 false Chr11: 19253246-19253745 Glycine max
Glyma.11G175400 1.0kb upstream 1.0kb upstream 6718 true Chr11: 19253746-19260463 Glycine max
Glyma.11G175400 1.0kb upstream 1.0kb upstream 1000 false Chr11: 19259464-19260463 Glycine max
Glyma.11G175400 1.0kb downstream 1.0kb downstream 6718 true Chr11: 19252746-19259463 Glycine max
Glyma.11G175400 1.0kb downstream 1.0kb downstream 1000 false Chr11: 19252746-19253745 Glycine max
Glyma.11G175400 2.0kb upstream 2.0kb upstream 7718 true Chr11: 19253746-19261463 Glycine max
Glyma.11G175400 2.0kb upstream 2.0kb upstream 2000 false Chr11: 19259464-19261463 Glycine max
Glyma.11G175400 2.0kb downstream 2.0kb downstream 7718 true Chr11: 19251746-19259463 Glycine max
Glyma.11G175400 2.0kb downstream 2.0kb downstream 2000 false Chr11: 19251746-19253745 Glycine max
Glyma.11G175400 5.0kb upstream 5.0kb upstream 10718 true Chr11: 19253746-19264463 Glycine max
Glyma.11G175400 5.0kb upstream 5.0kb upstream 5000 false Chr11: 19259464-19264463 Glycine max
Glyma.11G175400 5.0kb downstream 5.0kb downstream 10718 true Chr11: 19248746-19259463 Glycine max
Glyma.11G175400 5.0kb downstream 5.0kb downstream 5000 false Chr11: 19248746-19253745 Glycine max
Glyma.11G175400 10.0kb upstream 10.0kb upstream 15718 true Chr11: 19253746-19269463 Glycine max
Glyma.11G175400 10.0kb upstream 10.0kb upstream 10000 false Chr11: 19259464-19269463 Glycine max
Glyma.11G175400 10.0kb downstream 10.0kb downstream 15718 true Chr11: 19243746-19259463 Glycine max
Glyma.11G175400 10.0kb downstream 10.0kb downstream 10000 false Chr11: 19243746-19253745 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307637 5265 Fabidae View MSA
124073935 5270 Rosid View MSA
123747200 5271 Pentapetalae View MSA
122786859 5272 Eudicot View MSA
122050833 5273 Angiosperm View MSA
121348139 5274 Embryophyte View MSA
123428671 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.3377 0.0 39.1771   High
cufflinks 9.98901 0.0 34.8206    
cufflinks 14.6455 0.0 50.2361   High
cufflinks 6.92404 0.0 25.3412    
cufflinks 7.06882 0.0 25.8832    
cufflinks 5.77679 0.0 21.9239   Low
cufflinks 6.37703 0.0 23.9144    
cufflinks 7.51889 0.0 27.1791    
cufflinks 8.97384 0.0 31.6055    
cufflinks 1.704       Low
cufflinks 2.596        
cufflinks 2.861        
cufflinks 2.153        
cufflinks 2.442        
cufflinks 2.636        
cufflinks 3.877       High
cufflinks 1.348       Low
cufflinks 3.24        
cufflinks 3.169        
cufflinks 4.093       High
cufflinks 2.573        
cufflinks 4.159       High
cufflinks 3.37        
cufflinks 2.702        
cufflinks 4.059       High
cufflinks 2.137        

0 Strain