Gene : Glyma.11G175700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23163:SF3 - E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 Genomic Order:  1757
Name:  ? Glyma.11G175700 Secondary Identifier:  ? PAC:30531386
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G175700 0.5kb upstream 0.5kb upstream 35709 true Chr11: 19678619-19714327 Glycine max
Glyma.11G175700 0.5kb upstream 0.5kb upstream 500 false Chr11: 19678619-19679118 Glycine max
Glyma.11G175700 0.5kb downstream 0.5kb downstream 35709 true Chr11: 19679119-19714827 Glycine max
Glyma.11G175700 0.5kb downstream 0.5kb downstream 500 false Chr11: 19714328-19714827 Glycine max
Glyma.11G175700 1.0kb upstream 1.0kb upstream 36209 true Chr11: 19678119-19714327 Glycine max
Glyma.11G175700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 19678119-19679118 Glycine max
Glyma.11G175700 1.0kb downstream 1.0kb downstream 36209 true Chr11: 19679119-19715327 Glycine max
Glyma.11G175700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 19714328-19715327 Glycine max
Glyma.11G175700 2.0kb upstream 2.0kb upstream 37209 true Chr11: 19677119-19714327 Glycine max
Glyma.11G175700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 19677119-19679118 Glycine max
Glyma.11G175700 2.0kb downstream 2.0kb downstream 37209 true Chr11: 19679119-19716327 Glycine max
Glyma.11G175700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 19714328-19716327 Glycine max
Glyma.11G175700 5.0kb upstream 5.0kb upstream 40209 true Chr11: 19674119-19714327 Glycine max
Glyma.11G175700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 19674119-19679118 Glycine max
Glyma.11G175700 5.0kb downstream 5.0kb downstream 40209 true Chr11: 19679119-19719327 Glycine max
Glyma.11G175700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 19714328-19719327 Glycine max
Glyma.11G175700 10.0kb upstream 10.0kb upstream 45209 true Chr11: 19669119-19714327 Glycine max
Glyma.11G175700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 19669119-19679118 Glycine max
Glyma.11G175700 10.0kb downstream 10.0kb downstream 45209 true Chr11: 19679119-19724327 Glycine max
Glyma.11G175700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 19714328-19724327 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307119 5265 Fabidae View MSA
124061906 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.60486 0.0 25.5152   High
cufflinks 5.29025 0.0 21.762    
cufflinks 7.32743 0.0 35.8484   High
cufflinks 4.81964 0.0 23.9868    
cufflinks 3.78228 0.0 15.6182   Low
cufflinks 3.72786 0.0 17.2797   Low
cufflinks 4.88877 0.0 22.6107    
cufflinks 4.00718 0.0 16.2041    
cufflinks 5.20584 0.0 20.4802    
cufflinks 0.11       Low
cufflinks 0.17        
cufflinks 0.172        
cufflinks 0.112       Low
cufflinks 0.117       Low
cufflinks 0.206       High
cufflinks 0.16        
cufflinks 0.106       Low
cufflinks 0.157        
cufflinks 0.151        
cufflinks 0.183        
cufflinks 0.152        
cufflinks 0.2       High
cufflinks 0.162        
cufflinks 0.169        
cufflinks 0.178        
cufflinks 0.153        

0 Strain