Gene : Glyma.11G228600 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR13848:SF5 - PROTEIN YIPPEE-LIKE Genomic Order:  2286
Name:  ? Glyma.11G228600 Secondary Identifier:  ? PAC:30530831
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G228600 0.5kb upstream 0.5kb upstream 4095 true Chr11: 32390518-32394612 Glycine max
Glyma.11G228600 0.5kb upstream 0.5kb upstream 500 false Chr11: 32394113-32394612 Glycine max
Glyma.11G228600 0.5kb downstream 0.5kb downstream 4095 true Chr11: 32390018-32394112 Glycine max
Glyma.11G228600 0.5kb downstream 0.5kb downstream 500 false Chr11: 32390018-32390517 Glycine max
Glyma.11G228600 1.0kb upstream 1.0kb upstream 4595 true Chr11: 32390518-32395112 Glycine max
Glyma.11G228600 1.0kb upstream 1.0kb upstream 1000 false Chr11: 32394113-32395112 Glycine max
Glyma.11G228600 1.0kb downstream 1.0kb downstream 4595 true Chr11: 32389518-32394112 Glycine max
Glyma.11G228600 1.0kb downstream 1.0kb downstream 1000 false Chr11: 32389518-32390517 Glycine max
Glyma.11G228600 2.0kb upstream 2.0kb upstream 5595 true Chr11: 32390518-32396112 Glycine max
Glyma.11G228600 2.0kb upstream 2.0kb upstream 2000 false Chr11: 32394113-32396112 Glycine max
Glyma.11G228600 2.0kb downstream 2.0kb downstream 5595 true Chr11: 32388518-32394112 Glycine max
Glyma.11G228600 2.0kb downstream 2.0kb downstream 2000 false Chr11: 32388518-32390517 Glycine max
Glyma.11G228600 5.0kb upstream 5.0kb upstream 8595 true Chr11: 32390518-32399112 Glycine max
Glyma.11G228600 5.0kb upstream 5.0kb upstream 5000 false Chr11: 32394113-32399112 Glycine max
Glyma.11G228600 5.0kb downstream 5.0kb downstream 8595 true Chr11: 32385518-32394112 Glycine max
Glyma.11G228600 5.0kb downstream 5.0kb downstream 5000 false Chr11: 32385518-32390517 Glycine max
Glyma.11G228600 10.0kb upstream 10.0kb upstream 13595 true Chr11: 32390518-32404112 Glycine max
Glyma.11G228600 10.0kb upstream 10.0kb upstream 10000 false Chr11: 32394113-32404112 Glycine max
Glyma.11G228600 10.0kb downstream 10.0kb downstream 13595 true Chr11: 32380518-32394112 Glycine max
Glyma.11G228600 10.0kb downstream 10.0kb downstream 10000 false Chr11: 32380518-32390517 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309707 5265 Fabidae View MSA
124065020 5270 Rosid View MSA
123748773 5271 Pentapetalae View MSA
122791142 5272 Eudicot View MSA
122047992 5273 Angiosperm View MSA
123428914 5275 Viridiplantae View MSA
121350900 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.0101 0.0 61.7949   Low
cufflinks 24.6605 0.0 93.9509 High  
cufflinks 11.3131 0.0 52.8723   Low
cufflinks 23.1702 0.0 87.2996 High  
cufflinks 27.691 0.0 103.442 High  
cufflinks 33.973 0.0 138.932 High  
cufflinks 26.997 0.0 100.552 High  
cufflinks 26.7006 0.0 110.29 High  
cufflinks 35.9752 0.0 129.822 High High
cufflinks 2.221        
cufflinks 1.291       Low
cufflinks 1.434        
cufflinks 1.826        
cufflinks 1.827        
cufflinks 1.922        
cufflinks 2.383       High
cufflinks 1.173       Low
cufflinks 2.294        
cufflinks 1.807        
cufflinks 2.421       High
cufflinks 1.29       Low
cufflinks 2.292        
cufflinks 2.285        
cufflinks 1.468        
cufflinks 2.581       High
cufflinks 1.437        

0 Strain