Gene : Glyma.11G231300 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR12565//PTHR12565:SF181 - STEROL REGULATORY ELEMENT-BINDING PROTEIN Genomic Order:  2313
Name:  ? Glyma.11G231300 Secondary Identifier:  ? PAC:30531206
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G231300 0.5kb upstream 0.5kb upstream 2774 true Chr11: 32689544-32692317 Glycine max
Glyma.11G231300 0.5kb upstream 0.5kb upstream 500 false Chr11: 32689544-32690043 Glycine max
Glyma.11G231300 0.5kb downstream 0.5kb downstream 2774 true Chr11: 32690044-32692817 Glycine max
Glyma.11G231300 0.5kb downstream 0.5kb downstream 500 false Chr11: 32692318-32692817 Glycine max
Glyma.11G231300 1.0kb upstream 1.0kb upstream 3274 true Chr11: 32689044-32692317 Glycine max
Glyma.11G231300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 32689044-32690043 Glycine max
Glyma.11G231300 1.0kb downstream 1.0kb downstream 3274 true Chr11: 32690044-32693317 Glycine max
Glyma.11G231300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 32692318-32693317 Glycine max
Glyma.11G231300 2.0kb upstream 2.0kb upstream 4274 true Chr11: 32688044-32692317 Glycine max
Glyma.11G231300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 32688044-32690043 Glycine max
Glyma.11G231300 2.0kb downstream 2.0kb downstream 4274 true Chr11: 32690044-32694317 Glycine max
Glyma.11G231300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 32692318-32694317 Glycine max
Glyma.11G231300 5.0kb upstream 5.0kb upstream 7274 true Chr11: 32685044-32692317 Glycine max
Glyma.11G231300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 32685044-32690043 Glycine max
Glyma.11G231300 5.0kb downstream 5.0kb downstream 7274 true Chr11: 32690044-32697317 Glycine max
Glyma.11G231300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 32692318-32697317 Glycine max
Glyma.11G231300 10.0kb upstream 10.0kb upstream 12274 true Chr11: 32680044-32692317 Glycine max
Glyma.11G231300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 32680044-32690043 Glycine max
Glyma.11G231300 10.0kb downstream 10.0kb downstream 12274 true Chr11: 32690044-32702317 Glycine max
Glyma.11G231300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 32692318-32702317 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122246647 5265 Fabidae Singleton cluster - no MSA
124063256 5270 Rosid View MSA
123736392 5271 Pentapetalae View MSA
122786016 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.59542 0.0 18.7472    
cufflinks 3.61701 0.0 15.8158    
cufflinks 44.5398 0.0 143.141 High High
cufflinks 3.5025 0.0 15.2246    
cufflinks 1.8345 0.0 9.73225    
cufflinks 0.516641 0.0 2.50919   Low
cufflinks 0.140436 0.0 1.05858 Low Low
cufflinks 35.1549 0.0 112.813 High High
cufflinks 2.8876 0.0 13.3943    
cufflinks 3.664       High
cufflinks 0.058        
cufflinks 8.745     High High
cufflinks 0.064     Low  
cufflinks 0.004     Low Low
cufflinks 0.24        
cufflinks 1.171        
cufflinks 0.102        
cufflinks 2.015        
cufflinks 0.94        
cufflinks 0.593        
cufflinks 0.3        
cufflinks 0.696        
cufflinks 0.607        
cufflinks 0.119        
cufflinks 1.014        
cufflinks 0.073        

0 Strain