Gene : Glyma.11G253100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11390:SF20 - DNA TOPOISOMERASE 3-BETA-1 Genomic Order:  2531
Name:  ? Glyma.11G253100 Secondary Identifier:  ? PAC:30530701
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G253100 0.5kb upstream 0.5kb upstream 8154 true Chr11: 34394104-34402257 Glycine max
Glyma.11G253100 0.5kb upstream 0.5kb upstream 500 false Chr11: 34401758-34402257 Glycine max
Glyma.11G253100 0.5kb downstream 0.5kb downstream 8154 true Chr11: 34393604-34401757 Glycine max
Glyma.11G253100 0.5kb downstream 0.5kb downstream 500 false Chr11: 34393604-34394103 Glycine max
Glyma.11G253100 1.0kb upstream 1.0kb upstream 8654 true Chr11: 34394104-34402757 Glycine max
Glyma.11G253100 1.0kb upstream 1.0kb upstream 1000 false Chr11: 34401758-34402757 Glycine max
Glyma.11G253100 1.0kb downstream 1.0kb downstream 8654 true Chr11: 34393104-34401757 Glycine max
Glyma.11G253100 1.0kb downstream 1.0kb downstream 1000 false Chr11: 34393104-34394103 Glycine max
Glyma.11G253100 2.0kb upstream 2.0kb upstream 9654 true Chr11: 34394104-34403757 Glycine max
Glyma.11G253100 2.0kb upstream 2.0kb upstream 2000 false Chr11: 34401758-34403757 Glycine max
Glyma.11G253100 2.0kb downstream 2.0kb downstream 9654 true Chr11: 34392104-34401757 Glycine max
Glyma.11G253100 2.0kb downstream 2.0kb downstream 2000 false Chr11: 34392104-34394103 Glycine max
Glyma.11G253100 5.0kb upstream 5.0kb upstream 12654 true Chr11: 34394104-34406757 Glycine max
Glyma.11G253100 5.0kb upstream 5.0kb upstream 5000 false Chr11: 34401758-34406757 Glycine max
Glyma.11G253100 5.0kb downstream 5.0kb downstream 12654 true Chr11: 34389104-34401757 Glycine max
Glyma.11G253100 5.0kb downstream 5.0kb downstream 5000 false Chr11: 34389104-34394103 Glycine max
Glyma.11G253100 10.0kb upstream 10.0kb upstream 17654 true Chr11: 34394104-34411757 Glycine max
Glyma.11G253100 10.0kb upstream 10.0kb upstream 10000 false Chr11: 34401758-34411757 Glycine max
Glyma.11G253100 10.0kb downstream 10.0kb downstream 17654 true Chr11: 34384104-34401757 Glycine max
Glyma.11G253100 10.0kb downstream 10.0kb downstream 10000 false Chr11: 34384104-34394103 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041072 5273 Angiosperm View MSA
122299125 5265 Fabidae View MSA
124073148 5270 Rosid View MSA
123740785 5271 Pentapetalae View MSA
122785761 5272 Eudicot View MSA
121346575 5274 Embryophyte View MSA
123425013 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.37608 0.0 19.4295    
cufflinks 7.2574 0.0 25.2043    
cufflinks 5.08502 0.0 18.4278    
cufflinks 5.81838 0.0 20.6606    
cufflinks 7.56583 0.0 26.1871    
cufflinks 3.5227 0.0 13.926   Low
cufflinks 11.9219 0.0 40.7358   High
cufflinks 6.06726 0.0 21.5536    
cufflinks 6.00037 0.0 21.292    
cufflinks 1.432        
cufflinks 0.855       Low
cufflinks 1.434        
cufflinks 1.743        
cufflinks 2.317       High
cufflinks 0.986       Low
cufflinks 1.78        
cufflinks 0.985       Low
cufflinks 1.682        
cufflinks 2.174       High
cufflinks 1.821        
cufflinks 1.018       Low
cufflinks 1.746        
cufflinks 1.433        
cufflinks 0.881       Low
cufflinks 1.795        
cufflinks 1.041        

0 Strain