Gene : Glyma.12G001600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23241:SF50 - LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  16
Name:  ? Glyma.12G001600 Secondary Identifier:  ? PAC:30548827
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G001600 0.5kb upstream 0.5kb upstream 1888 true Chr12: 127045-128932 Glycine max
Glyma.12G001600 0.5kb upstream 0.5kb upstream 500 false Chr12: 127045-127544 Glycine max
Glyma.12G001600 0.5kb downstream 0.5kb downstream 1888 true Chr12: 127545-129432 Glycine max
Glyma.12G001600 0.5kb downstream 0.5kb downstream 500 false Chr12: 128933-129432 Glycine max
Glyma.12G001600 1.0kb upstream 1.0kb upstream 2388 true Chr12: 126545-128932 Glycine max
Glyma.12G001600 1.0kb upstream 1.0kb upstream 1000 false Chr12: 126545-127544 Glycine max
Glyma.12G001600 1.0kb downstream 1.0kb downstream 2388 true Chr12: 127545-129932 Glycine max
Glyma.12G001600 1.0kb downstream 1.0kb downstream 1000 false Chr12: 128933-129932 Glycine max
Glyma.12G001600 2.0kb upstream 2.0kb upstream 3388 true Chr12: 125545-128932 Glycine max
Glyma.12G001600 2.0kb upstream 2.0kb upstream 2000 false Chr12: 125545-127544 Glycine max
Glyma.12G001600 2.0kb downstream 2.0kb downstream 3388 true Chr12: 127545-130932 Glycine max
Glyma.12G001600 2.0kb downstream 2.0kb downstream 2000 false Chr12: 128933-130932 Glycine max
Glyma.12G001600 5.0kb upstream 5.0kb upstream 6388 true Chr12: 122545-128932 Glycine max
Glyma.12G001600 5.0kb upstream 5.0kb upstream 5000 false Chr12: 122545-127544 Glycine max
Glyma.12G001600 5.0kb downstream 5.0kb downstream 6388 true Chr12: 127545-133932 Glycine max
Glyma.12G001600 5.0kb downstream 5.0kb downstream 5000 false Chr12: 128933-133932 Glycine max
Glyma.12G001600 10.0kb upstream 10.0kb upstream 11388 true Chr12: 117545-128932 Glycine max
Glyma.12G001600 10.0kb upstream 10.0kb upstream 10000 false Chr12: 117545-127544 Glycine max
Glyma.12G001600 10.0kb downstream 10.0kb downstream 11388 true Chr12: 127545-138932 Glycine max
Glyma.12G001600 10.0kb downstream 10.0kb downstream 10000 false Chr12: 128933-138932 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239741 5265 Fabidae Singleton cluster - no MSA
124072864 5270 Rosid View MSA
123741808 5271 Pentapetalae View MSA
122794616 5272 Eudicot View MSA
122045721 5273 Angiosperm View MSA
121349691 5274 Embryophyte View MSA
123428296 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0622088 0.0 0.253427 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.10728 0.0 0.427092 Low  
cufflinks 0.541848 0.0 2.01816    
cufflinks 0.303944 0.0 1.16198    
cufflinks 1.01652 0.0 3.6532    
cufflinks 34.8363 0.0 93.7973 High High
cufflinks 0.182316 0.0 0.711865 Low  
cufflinks 0.417113 0.0 1.57213    
cufflinks 0.084     Low  
cufflinks 0.271       High
cufflinks 0.272       High
cufflinks 0.073     Low  
cufflinks 0.031     Low Low
cufflinks 0.015     Low Low
cufflinks 0.068     Low  
cufflinks 0.033     Low Low
cufflinks 0.136        
cufflinks 0.039     Low  
cufflinks 0.089     Low  
cufflinks 0.31       High
cufflinks 0.055     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.197        
cufflinks 0.13        
cufflinks 0.208        

0 Strain