Gene : Glyma.11G245500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13164:SF7 - COP1-INTERACTING PROTEIN 4-RELATED Genomic Order:  2455
Name:  ? Glyma.11G245500 Secondary Identifier:  ? PAC:30529376
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G245500 0.5kb upstream 0.5kb upstream 6474 true Chr11: 33894761-33901234 Glycine max
Glyma.11G245500 0.5kb upstream 0.5kb upstream 500 false Chr11: 33900735-33901234 Glycine max
Glyma.11G245500 0.5kb downstream 0.5kb downstream 6474 true Chr11: 33894261-33900734 Glycine max
Glyma.11G245500 0.5kb downstream 0.5kb downstream 500 false Chr11: 33894261-33894760 Glycine max
Glyma.11G245500 1.0kb upstream 1.0kb upstream 6974 true Chr11: 33894761-33901734 Glycine max
Glyma.11G245500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 33900735-33901734 Glycine max
Glyma.11G245500 1.0kb downstream 1.0kb downstream 6974 true Chr11: 33893761-33900734 Glycine max
Glyma.11G245500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 33893761-33894760 Glycine max
Glyma.11G245500 2.0kb upstream 2.0kb upstream 7974 true Chr11: 33894761-33902734 Glycine max
Glyma.11G245500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 33900735-33902734 Glycine max
Glyma.11G245500 2.0kb downstream 2.0kb downstream 7974 true Chr11: 33892761-33900734 Glycine max
Glyma.11G245500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 33892761-33894760 Glycine max
Glyma.11G245500 5.0kb upstream 5.0kb upstream 10974 true Chr11: 33894761-33905734 Glycine max
Glyma.11G245500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 33900735-33905734 Glycine max
Glyma.11G245500 5.0kb downstream 5.0kb downstream 10974 true Chr11: 33889761-33900734 Glycine max
Glyma.11G245500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 33889761-33894760 Glycine max
Glyma.11G245500 10.0kb upstream 10.0kb upstream 15974 true Chr11: 33894761-33910734 Glycine max
Glyma.11G245500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 33900735-33910734 Glycine max
Glyma.11G245500 10.0kb downstream 10.0kb downstream 15974 true Chr11: 33884761-33900734 Glycine max
Glyma.11G245500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 33884761-33894760 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299394 5265 Fabidae View MSA
124069381 5270 Rosid View MSA
123743976 5271 Pentapetalae View MSA
122793189 5272 Eudicot View MSA
122042859 5273 Angiosperm View MSA
121310036 5274 Embryophyte View MSA
123347639 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.81282 0.0 13.7034    
cufflinks 3.45772 0.0 10.841    
cufflinks 2.51471 0.0 8.30404   Low
cufflinks 3.13598 0.0 11.6438    
cufflinks 3.66377 0.0 13.1809    
cufflinks 2.00666 0.0 7.05978   Low
cufflinks 4.95052 0.0 14.923   High
cufflinks 3.08469 0.0 9.82289    
cufflinks 3.66072 0.0 11.3376    
cufflinks 1.0        
cufflinks 0.496       Low
cufflinks 1.645        
cufflinks 2.038       High
cufflinks 2.787       High
cufflinks 1.25        
cufflinks 0.967        
cufflinks 0.551       Low
cufflinks 1.459        
cufflinks 1.39        
cufflinks 0.935        
cufflinks 0.855        
cufflinks 1.044        
cufflinks 0.968        
cufflinks 0.653       Low
cufflinks 1.136        
cufflinks 0.897        

0 Strain