Gene : Glyma.11G239500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22904:SF358 - CC-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  2395
Name:  ? Glyma.11G239500 Secondary Identifier:  ? PAC:30528552
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G239500 0.5kb upstream 0.5kb upstream 3429 true Chr11: 33390513-33393941 Glycine max
Glyma.11G239500 0.5kb upstream 0.5kb upstream 500 false Chr11: 33393442-33393941 Glycine max
Glyma.11G239500 0.5kb downstream 0.5kb downstream 3429 true Chr11: 33390013-33393441 Glycine max
Glyma.11G239500 0.5kb downstream 0.5kb downstream 500 false Chr11: 33390013-33390512 Glycine max
Glyma.11G239500 1.0kb upstream 1.0kb upstream 3929 true Chr11: 33390513-33394441 Glycine max
Glyma.11G239500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 33393442-33394441 Glycine max
Glyma.11G239500 1.0kb downstream 1.0kb downstream 3929 true Chr11: 33389513-33393441 Glycine max
Glyma.11G239500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 33389513-33390512 Glycine max
Glyma.11G239500 2.0kb upstream 2.0kb upstream 4929 true Chr11: 33390513-33395441 Glycine max
Glyma.11G239500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 33393442-33395441 Glycine max
Glyma.11G239500 2.0kb downstream 2.0kb downstream 4929 true Chr11: 33388513-33393441 Glycine max
Glyma.11G239500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 33388513-33390512 Glycine max
Glyma.11G239500 5.0kb upstream 5.0kb upstream 7929 true Chr11: 33390513-33398441 Glycine max
Glyma.11G239500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 33393442-33398441 Glycine max
Glyma.11G239500 5.0kb downstream 5.0kb downstream 7929 true Chr11: 33385513-33393441 Glycine max
Glyma.11G239500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 33385513-33390512 Glycine max
Glyma.11G239500 10.0kb upstream 10.0kb upstream 12929 true Chr11: 33390513-33403441 Glycine max
Glyma.11G239500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 33393442-33403441 Glycine max
Glyma.11G239500 10.0kb downstream 10.0kb downstream 12929 true Chr11: 33380513-33393441 Glycine max
Glyma.11G239500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 33380513-33390512 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304897 5265 Fabidae View MSA
124063288 5270 Rosid View MSA
123737789 5271 Pentapetalae View MSA
122790297 5272 Eudicot View MSA
122047040 5273 Angiosperm View MSA
121310683 5274 Embryophyte View MSA
123348108 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0346919 0.0 0.141328 Low Low
cufflinks 0.347527 0.0 1.28417    
cufflinks 8.2119 0.0 22.0722   High
cufflinks 0.529097 0.0 1.9056    
cufflinks 0.140872 0.0 0.543116 Low  
cufflinks 0.0486882 0.0 0.195456 Low Low
cufflinks 0.513207 0.0 1.85724    
cufflinks 0.35264 0.0 1.30161    
cufflinks 0.240582 0.0 0.905289 Low  
cufflinks 0.094     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.093       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low Low
cufflinks 0.653       High
cufflinks 0.205        
cufflinks 0.039     Low  
cufflinks 3.542       High
cufflinks 0.138        
cufflinks 0.17        
cufflinks 0.007     Low Low
cufflinks 0.158        
cufflinks 0.052     Low  
cufflinks 0.013     Low Low
cufflinks 0.135        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain