Gene : Glyma.12G023500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR34574:SF2 - EF-HAND CONTAINING PROTEIN-LIKE Genomic Order:  235
Name:  ? Glyma.12G023500 Secondary Identifier:  ? PAC:30548963
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G023500 0.5kb upstream 0.5kb upstream 4745 true Chr12: 1728851-1733595 Glycine max
Glyma.12G023500 0.5kb upstream 0.5kb upstream 500 false Chr12: 1728851-1729350 Glycine max
Glyma.12G023500 0.5kb downstream 0.5kb downstream 4745 true Chr12: 1729351-1734095 Glycine max
Glyma.12G023500 0.5kb downstream 0.5kb downstream 500 false Chr12: 1733596-1734095 Glycine max
Glyma.12G023500 1.0kb upstream 1.0kb upstream 5245 true Chr12: 1728351-1733595 Glycine max
Glyma.12G023500 1.0kb upstream 1.0kb upstream 1000 false Chr12: 1728351-1729350 Glycine max
Glyma.12G023500 1.0kb downstream 1.0kb downstream 5245 true Chr12: 1729351-1734595 Glycine max
Glyma.12G023500 1.0kb downstream 1.0kb downstream 1000 false Chr12: 1733596-1734595 Glycine max
Glyma.12G023500 2.0kb upstream 2.0kb upstream 6245 true Chr12: 1727351-1733595 Glycine max
Glyma.12G023500 2.0kb upstream 2.0kb upstream 2000 false Chr12: 1727351-1729350 Glycine max
Glyma.12G023500 2.0kb downstream 2.0kb downstream 6245 true Chr12: 1729351-1735595 Glycine max
Glyma.12G023500 2.0kb downstream 2.0kb downstream 2000 false Chr12: 1733596-1735595 Glycine max
Glyma.12G023500 5.0kb upstream 5.0kb upstream 9245 true Chr12: 1724351-1733595 Glycine max
Glyma.12G023500 5.0kb upstream 5.0kb upstream 5000 false Chr12: 1724351-1729350 Glycine max
Glyma.12G023500 5.0kb downstream 5.0kb downstream 9245 true Chr12: 1729351-1738595 Glycine max
Glyma.12G023500 5.0kb downstream 5.0kb downstream 5000 false Chr12: 1733596-1738595 Glycine max
Glyma.12G023500 10.0kb upstream 10.0kb upstream 14245 true Chr12: 1719351-1733595 Glycine max
Glyma.12G023500 10.0kb upstream 10.0kb upstream 10000 false Chr12: 1719351-1729350 Glycine max
Glyma.12G023500 10.0kb downstream 10.0kb downstream 14245 true Chr12: 1729351-1743595 Glycine max
Glyma.12G023500 10.0kb downstream 10.0kb downstream 10000 false Chr12: 1733596-1743595 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239721 5265 Fabidae Singleton cluster - no MSA
124062130 5270 Rosid View MSA
123739646 5271 Pentapetalae View MSA
122789381 5272 Eudicot View MSA
122043203 5273 Angiosperm View MSA
121346779 5274 Embryophyte View MSA
123380443 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.11868 0.0 36.2794   High
cufflinks 6.2653 0.0 25.2973    
cufflinks 1.50177 0.0 10.7663    
cufflinks 1.48792 0.0 10.9094    
cufflinks 3.06391 0.0 15.5436    
cufflinks 5.86282 0.0 26.4376    
cufflinks 0.911341 0.0 6.38153   Low
cufflinks 2.55051 0.0 13.6304    
cufflinks 6.36081 0.0 25.4995    
cufflinks 0.116       Low
cufflinks 0.4        
cufflinks 0.481        
cufflinks 0.681        
cufflinks 0.377        
cufflinks 0.113       Low
cufflinks 0.919        
cufflinks 0.33        
cufflinks 0.51        
cufflinks 0.732        
cufflinks 1.132        
cufflinks 0.348        
cufflinks 1.627       High
cufflinks 1.429       High
cufflinks 0.579        
cufflinks 1.244       High
cufflinks 0.524        

0 Strain