Gene : Glyma.12G015700 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12510 - TROPONIN C-AKIN-1 PROTEIN Genomic Order:  157
Name:  ? Glyma.12G015700 Secondary Identifier:  ? PAC:30548987
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G015700 0.5kb upstream 0.5kb upstream 1578 true Chr12: 1122541-1124118 Glycine max
Glyma.12G015700 0.5kb upstream 0.5kb upstream 500 false Chr12: 1123619-1124118 Glycine max
Glyma.12G015700 0.5kb downstream 0.5kb downstream 1578 true Chr12: 1122041-1123618 Glycine max
Glyma.12G015700 0.5kb downstream 0.5kb downstream 500 false Chr12: 1122041-1122540 Glycine max
Glyma.12G015700 1.0kb upstream 1.0kb upstream 2078 true Chr12: 1122541-1124618 Glycine max
Glyma.12G015700 1.0kb upstream 1.0kb upstream 1000 false Chr12: 1123619-1124618 Glycine max
Glyma.12G015700 1.0kb downstream 1.0kb downstream 2078 true Chr12: 1121541-1123618 Glycine max
Glyma.12G015700 1.0kb downstream 1.0kb downstream 1000 false Chr12: 1121541-1122540 Glycine max
Glyma.12G015700 2.0kb upstream 2.0kb upstream 3078 true Chr12: 1122541-1125618 Glycine max
Glyma.12G015700 2.0kb upstream 2.0kb upstream 2000 false Chr12: 1123619-1125618 Glycine max
Glyma.12G015700 2.0kb downstream 2.0kb downstream 3078 true Chr12: 1120541-1123618 Glycine max
Glyma.12G015700 2.0kb downstream 2.0kb downstream 2000 false Chr12: 1120541-1122540 Glycine max
Glyma.12G015700 5.0kb upstream 5.0kb upstream 6078 true Chr12: 1122541-1128618 Glycine max
Glyma.12G015700 5.0kb upstream 5.0kb upstream 5000 false Chr12: 1123619-1128618 Glycine max
Glyma.12G015700 5.0kb downstream 5.0kb downstream 6078 true Chr12: 1117541-1123618 Glycine max
Glyma.12G015700 5.0kb downstream 5.0kb downstream 5000 false Chr12: 1117541-1122540 Glycine max
Glyma.12G015700 10.0kb upstream 10.0kb upstream 11078 true Chr12: 1122541-1133618 Glycine max
Glyma.12G015700 10.0kb upstream 10.0kb upstream 10000 false Chr12: 1123619-1133618 Glycine max
Glyma.12G015700 10.0kb downstream 10.0kb downstream 11078 true Chr12: 1112541-1123618 Glycine max
Glyma.12G015700 10.0kb downstream 10.0kb downstream 10000 false Chr12: 1112541-1122540 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303100 5265 Fabidae View MSA
124068981 5270 Rosid View MSA
123739827 5271 Pentapetalae View MSA
122789137 5272 Eudicot View MSA
122047462 5273 Angiosperm View MSA
121349435 5274 Embryophyte View MSA
123425179 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.4257 0.0 116.123 High  
cufflinks 28.353 0.0 75.8697 High  
cufflinks 67.5024 0.0 183.547 High High
cufflinks 15.1468 0.0 41.9473   Low
cufflinks 21.4699 0.0 57.8732 High  
cufflinks 26.3814 0.0 70.6628 High  
cufflinks 13.2604 0.0 37.0073   Low
cufflinks 39.213 0.0 104.655 High  
cufflinks 37.8017 0.0 100.885 High  
cufflinks 18.518     High  
cufflinks 18.911     High  
cufflinks 38.498     High  
cufflinks 6.034       Low
cufflinks 1.398       Low
cufflinks 21.068     High  
cufflinks 13.463     High  
cufflinks 110.53     High High
cufflinks 20.309     High  
cufflinks 21.16     High  
cufflinks 8.334     High  
cufflinks 34.747     High  
cufflinks 8.708     High  
cufflinks 18.524     High  
cufflinks 16.301     High  
cufflinks 6.344        
cufflinks 41.852     High  

0 Strain