Gene : Glyma.12G018300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11946//PTHR11946:SF78 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES Genomic Order:  183
Name:  ? Glyma.12G018300 Secondary Identifier:  ? PAC:30545826
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G018300 0.5kb upstream 0.5kb upstream 5171 true Chr12: 1284563-1289733 Glycine max
Glyma.12G018300 0.5kb upstream 0.5kb upstream 500 false Chr12: 1284563-1285062 Glycine max
Glyma.12G018300 0.5kb downstream 0.5kb downstream 5171 true Chr12: 1285063-1290233 Glycine max
Glyma.12G018300 0.5kb downstream 0.5kb downstream 500 false Chr12: 1289734-1290233 Glycine max
Glyma.12G018300 1.0kb upstream 1.0kb upstream 5671 true Chr12: 1284063-1289733 Glycine max
Glyma.12G018300 1.0kb upstream 1.0kb upstream 1000 false Chr12: 1284063-1285062 Glycine max
Glyma.12G018300 1.0kb downstream 1.0kb downstream 5671 true Chr12: 1285063-1290733 Glycine max
Glyma.12G018300 1.0kb downstream 1.0kb downstream 1000 false Chr12: 1289734-1290733 Glycine max
Glyma.12G018300 2.0kb upstream 2.0kb upstream 6671 true Chr12: 1283063-1289733 Glycine max
Glyma.12G018300 2.0kb upstream 2.0kb upstream 2000 false Chr12: 1283063-1285062 Glycine max
Glyma.12G018300 2.0kb downstream 2.0kb downstream 6671 true Chr12: 1285063-1291733 Glycine max
Glyma.12G018300 2.0kb downstream 2.0kb downstream 2000 false Chr12: 1289734-1291733 Glycine max
Glyma.12G018300 5.0kb upstream 5.0kb upstream 9671 true Chr12: 1280063-1289733 Glycine max
Glyma.12G018300 5.0kb upstream 5.0kb upstream 5000 false Chr12: 1280063-1285062 Glycine max
Glyma.12G018300 5.0kb downstream 5.0kb downstream 9671 true Chr12: 1285063-1294733 Glycine max
Glyma.12G018300 5.0kb downstream 5.0kb downstream 5000 false Chr12: 1289734-1294733 Glycine max
Glyma.12G018300 10.0kb upstream 10.0kb upstream 14671 true Chr12: 1275063-1289733 Glycine max
Glyma.12G018300 10.0kb upstream 10.0kb upstream 10000 false Chr12: 1275063-1285062 Glycine max
Glyma.12G018300 10.0kb downstream 10.0kb downstream 14671 true Chr12: 1285063-1299733 Glycine max
Glyma.12G018300 10.0kb downstream 10.0kb downstream 10000 false Chr12: 1289734-1299733 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122244891 5265 Fabidae Singleton cluster - no MSA
124066402 5270 Rosid View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.688674 0.0 4.88927    
cufflinks 0.393478 0.0 1.83779   Low
cufflinks 0.484116 0.0 3.07393    
cufflinks 0.82514 0.0 4.61152    
cufflinks 0.361763 0.0 1.71535   Low
cufflinks 0.603533 0.0 2.67261    
cufflinks 0.52213 0.0 2.3751    
cufflinks 0.499978 0.0 2.25942    
cufflinks 1.2243 0.0 6.11283   High
cufflinks 0.3        
cufflinks 0.464        
cufflinks 0.447        
cufflinks 0.661       High
cufflinks 0.792       High
cufflinks 0.236       Low
cufflinks 0.31        
cufflinks 0.259        
cufflinks 0.741       High
cufflinks 0.359        
cufflinks 0.249        
cufflinks 0.275        
cufflinks 0.303        
cufflinks 0.249        
cufflinks 0.369        
cufflinks 0.248        
cufflinks 0.634       High

0 Strain