Gene : Glyma.12G018400 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR11946:SF86 - METHIONINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  184
Name:  ? Glyma.12G018400 Secondary Identifier:  ? PAC:30546781
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G018400 0.5kb upstream 0.5kb upstream 6258 true Chr12: 1290697-1296954 Glycine max
Glyma.12G018400 0.5kb upstream 0.5kb upstream 500 false Chr12: 1290697-1291196 Glycine max
Glyma.12G018400 0.5kb downstream 0.5kb downstream 6258 true Chr12: 1291197-1297454 Glycine max
Glyma.12G018400 0.5kb downstream 0.5kb downstream 500 false Chr12: 1296955-1297454 Glycine max
Glyma.12G018400 1.0kb upstream 1.0kb upstream 6758 true Chr12: 1290197-1296954 Glycine max
Glyma.12G018400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 1290197-1291196 Glycine max
Glyma.12G018400 1.0kb downstream 1.0kb downstream 6758 true Chr12: 1291197-1297954 Glycine max
Glyma.12G018400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 1296955-1297954 Glycine max
Glyma.12G018400 2.0kb upstream 2.0kb upstream 7758 true Chr12: 1289197-1296954 Glycine max
Glyma.12G018400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 1289197-1291196 Glycine max
Glyma.12G018400 2.0kb downstream 2.0kb downstream 7758 true Chr12: 1291197-1298954 Glycine max
Glyma.12G018400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 1296955-1298954 Glycine max
Glyma.12G018400 5.0kb upstream 5.0kb upstream 10758 true Chr12: 1286197-1296954 Glycine max
Glyma.12G018400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 1286197-1291196 Glycine max
Glyma.12G018400 5.0kb downstream 5.0kb downstream 10758 true Chr12: 1291197-1301954 Glycine max
Glyma.12G018400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 1296955-1301954 Glycine max
Glyma.12G018400 10.0kb upstream 10.0kb upstream 15758 true Chr12: 1281197-1296954 Glycine max
Glyma.12G018400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 1281197-1291196 Glycine max
Glyma.12G018400 10.0kb downstream 10.0kb downstream 15758 true Chr12: 1291197-1306954 Glycine max
Glyma.12G018400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 1296955-1306954 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300512 5265 Fabidae View MSA
124066402 5270 Rosid View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.3025 0.0 112.73 High  
cufflinks 26.9504 0.0 103.621 High  
cufflinks 26.0908 0.0 112.381 High  
cufflinks 22.7378 0.0 95.1684 High Low
cufflinks 33.2242 0.0 135.483 High High
cufflinks 27.3765 0.0 118.333 High  
cufflinks 24.0593 0.0 100.512 High  
cufflinks 22.9141 0.0 85.3025 High Low
cufflinks 26.4567 0.0 113.451 High  
cufflinks 4.064        
cufflinks 4.093        
cufflinks 5.082        
cufflinks 8.048     High High
cufflinks 9.472     High High
cufflinks 2.986       Low
cufflinks 3.998        
cufflinks 3.31        
cufflinks 4.738        
cufflinks 5.998       High
cufflinks 3.29        
cufflinks 3.851        
cufflinks 3.359        
cufflinks 3.665        
cufflinks 3.693        
cufflinks 3.661        
cufflinks 4.038        

0 Strain