Gene : Glyma.12G009400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11586:SF18 - NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN Genomic Order:  94
Name:  ? Glyma.12G009400 Secondary Identifier:  ? PAC:30546908
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G009400 0.5kb upstream 0.5kb upstream 4464 true Chr12: 682744-687207 Glycine max
Glyma.12G009400 0.5kb upstream 0.5kb upstream 500 false Chr12: 686708-687207 Glycine max
Glyma.12G009400 0.5kb downstream 0.5kb downstream 4464 true Chr12: 682244-686707 Glycine max
Glyma.12G009400 0.5kb downstream 0.5kb downstream 500 false Chr12: 682244-682743 Glycine max
Glyma.12G009400 1.0kb upstream 1.0kb upstream 4964 true Chr12: 682744-687707 Glycine max
Glyma.12G009400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 686708-687707 Glycine max
Glyma.12G009400 1.0kb downstream 1.0kb downstream 4964 true Chr12: 681744-686707 Glycine max
Glyma.12G009400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 681744-682743 Glycine max
Glyma.12G009400 2.0kb upstream 2.0kb upstream 5964 true Chr12: 682744-688707 Glycine max
Glyma.12G009400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 686708-688707 Glycine max
Glyma.12G009400 2.0kb downstream 2.0kb downstream 5964 true Chr12: 680744-686707 Glycine max
Glyma.12G009400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 680744-682743 Glycine max
Glyma.12G009400 5.0kb upstream 5.0kb upstream 8964 true Chr12: 682744-691707 Glycine max
Glyma.12G009400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 686708-691707 Glycine max
Glyma.12G009400 5.0kb downstream 5.0kb downstream 8964 true Chr12: 677744-686707 Glycine max
Glyma.12G009400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 677744-682743 Glycine max
Glyma.12G009400 10.0kb upstream 10.0kb upstream 13964 true Chr12: 682744-696707 Glycine max
Glyma.12G009400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 686708-696707 Glycine max
Glyma.12G009400 10.0kb downstream 10.0kb downstream 13964 true Chr12: 672744-686707 Glycine max
Glyma.12G009400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 672744-682743 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300832 5265 Fabidae View MSA
124064095 5270 Rosid View MSA
123736629 5271 Pentapetalae View MSA
122792707 5272 Eudicot View MSA
122045155 5273 Angiosperm View MSA
121346605 5274 Embryophyte View MSA
123427531 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.1442 0.0 26.3337   High
cufflinks 6.57029 0.0 19.7751    
cufflinks 2.7386 0.0 9.27502   Low
cufflinks 4.91748 0.0 15.3841    
cufflinks 5.61396 0.0 17.2409    
cufflinks 5.09407 0.0 15.8689    
cufflinks 6.35033 0.0 19.1791    
cufflinks 5.61934 0.0 17.2364    
cufflinks 4.9202 0.0 15.4063    
cufflinks 2.019        
cufflinks 0.455       Low
cufflinks 1.116        
cufflinks 2.315        
cufflinks 2.724        
cufflinks 1.074        
cufflinks 3.336       High
cufflinks 0.637       Low
cufflinks 1.192        
cufflinks 2.052        
cufflinks 3.077       High
cufflinks 0.549       Low
cufflinks 2.927        
cufflinks 3.111       High
cufflinks 0.512       Low
cufflinks 3.065       High
cufflinks 0.721        

0 Strain