Gene : Glyma.12G005600 G. max Wm82.a2.v1
Defline:  (1 of 52) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  56
Name:  ? Glyma.12G005600 Secondary Identifier:  ? PAC:30548644
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G005600 0.5kb upstream 0.5kb upstream 2187 true Chr12: 429887-432073 Glycine max
Glyma.12G005600 0.5kb upstream 0.5kb upstream 500 false Chr12: 429887-430386 Glycine max
Glyma.12G005600 0.5kb downstream 0.5kb downstream 2187 true Chr12: 430387-432573 Glycine max
Glyma.12G005600 0.5kb downstream 0.5kb downstream 500 false Chr12: 432074-432573 Glycine max
Glyma.12G005600 1.0kb upstream 1.0kb upstream 2687 true Chr12: 429387-432073 Glycine max
Glyma.12G005600 1.0kb upstream 1.0kb upstream 1000 false Chr12: 429387-430386 Glycine max
Glyma.12G005600 1.0kb downstream 1.0kb downstream 2687 true Chr12: 430387-433073 Glycine max
Glyma.12G005600 1.0kb downstream 1.0kb downstream 1000 false Chr12: 432074-433073 Glycine max
Glyma.12G005600 2.0kb upstream 2.0kb upstream 3687 true Chr12: 428387-432073 Glycine max
Glyma.12G005600 2.0kb upstream 2.0kb upstream 2000 false Chr12: 428387-430386 Glycine max
Glyma.12G005600 2.0kb downstream 2.0kb downstream 3687 true Chr12: 430387-434073 Glycine max
Glyma.12G005600 2.0kb downstream 2.0kb downstream 2000 false Chr12: 432074-434073 Glycine max
Glyma.12G005600 5.0kb upstream 5.0kb upstream 6687 true Chr12: 425387-432073 Glycine max
Glyma.12G005600 5.0kb upstream 5.0kb upstream 5000 false Chr12: 425387-430386 Glycine max
Glyma.12G005600 5.0kb downstream 5.0kb downstream 6687 true Chr12: 430387-437073 Glycine max
Glyma.12G005600 5.0kb downstream 5.0kb downstream 5000 false Chr12: 432074-437073 Glycine max
Glyma.12G005600 10.0kb upstream 10.0kb upstream 11687 true Chr12: 420387-432073 Glycine max
Glyma.12G005600 10.0kb upstream 10.0kb upstream 10000 false Chr12: 420387-430386 Glycine max
Glyma.12G005600 10.0kb downstream 10.0kb downstream 11687 true Chr12: 430387-442073 Glycine max
Glyma.12G005600 10.0kb downstream 10.0kb downstream 10000 false Chr12: 432074-442073 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122032232 5273 Angiosperm View MSA
122308309 5265 Fabidae View MSA
124070759 5270 Rosid View MSA
123743197 5271 Pentapetalae View MSA
122770561 5272 Eudicot View MSA
121301155 5274 Embryophyte View MSA
123338836 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.281515 0.0 1.07279    
cufflinks 0.18862 0.0 0.732591 Low  
cufflinks 0.361435 0.0 1.36606    
cufflinks 0.218318 0.0 0.842499    
cufflinks 0.154157 0.0 0.601971 Low Low
cufflinks 0.272697 0.0 1.04031 Low  
cufflinks 0.594798 0.0 2.18733   High
cufflinks 0.149688 0.0 0.586393 Low Low
cufflinks 0.268417 0.0 1.0251    
cufflinks 0.315       High
cufflinks 0.156        
cufflinks 0.25       High
cufflinks 0.092     Low  
cufflinks 0.177        
cufflinks 0.161        
cufflinks 0.042     Low Low
cufflinks 0.179        
cufflinks 0.198        
cufflinks 0.109        
cufflinks 0.082     Low  
cufflinks 0.125        
cufflinks 0.065     Low Low
cufflinks 0.096     Low  
cufflinks 0.092        
cufflinks 0.075     Low  
cufflinks 0.065     Low Low

0 Strain