Gene : Glyma.12G044900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12300//PTHR12300:SF60 - HVA22-LIKE PROTEINS Genomic Order:  449
Name:  ? Glyma.12G044900 Secondary Identifier:  ? PAC:30546862
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G044900 0.5kb upstream 0.5kb upstream 3404 true Chr12: 3264314-3267717 Glycine max
Glyma.12G044900 0.5kb upstream 0.5kb upstream 500 false Chr12: 3264314-3264813 Glycine max
Glyma.12G044900 0.5kb downstream 0.5kb downstream 3404 true Chr12: 3264814-3268217 Glycine max
Glyma.12G044900 0.5kb downstream 0.5kb downstream 500 false Chr12: 3267718-3268217 Glycine max
Glyma.12G044900 1.0kb upstream 1.0kb upstream 3904 true Chr12: 3263814-3267717 Glycine max
Glyma.12G044900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3263814-3264813 Glycine max
Glyma.12G044900 1.0kb downstream 1.0kb downstream 3904 true Chr12: 3264814-3268717 Glycine max
Glyma.12G044900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3267718-3268717 Glycine max
Glyma.12G044900 2.0kb upstream 2.0kb upstream 4904 true Chr12: 3262814-3267717 Glycine max
Glyma.12G044900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3262814-3264813 Glycine max
Glyma.12G044900 2.0kb downstream 2.0kb downstream 4904 true Chr12: 3264814-3269717 Glycine max
Glyma.12G044900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3267718-3269717 Glycine max
Glyma.12G044900 5.0kb upstream 5.0kb upstream 7904 true Chr12: 3259814-3267717 Glycine max
Glyma.12G044900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3259814-3264813 Glycine max
Glyma.12G044900 5.0kb downstream 5.0kb downstream 7904 true Chr12: 3264814-3272717 Glycine max
Glyma.12G044900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3267718-3272717 Glycine max
Glyma.12G044900 10.0kb upstream 10.0kb upstream 12904 true Chr12: 3254814-3267717 Glycine max
Glyma.12G044900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3254814-3264813 Glycine max
Glyma.12G044900 10.0kb downstream 10.0kb downstream 12904 true Chr12: 3264814-3277717 Glycine max
Glyma.12G044900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3267718-3277717 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122255049 5265 Fabidae View MSA
124070048 5270 Rosid View MSA
123739293 5271 Pentapetalae View MSA
122793749 5272 Eudicot View MSA
122049785 5273 Angiosperm View MSA
121348295 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.13623 0.0 39.1296   High
cufflinks 8.16999 0.0 38.9697   High
cufflinks 6.78373 0.0 28.4715    
cufflinks 5.33031 0.0 29.9553    
cufflinks 5.25477 0.0 30.5344    
cufflinks 3.71301 0.0 20.006   Low
cufflinks 6.09754 0.0 28.4241    
cufflinks 8.40255 0.0 39.5472   High
cufflinks 4.39131 0.0 15.7928   Low
cufflinks 0.432        
cufflinks 0.246       Low
cufflinks 0.632        
cufflinks 0.404        
cufflinks 0.541        
cufflinks 0.226       Low
cufflinks 0.482        
cufflinks 0.331        
cufflinks 0.83       High
cufflinks 0.96       High
cufflinks 0.412        
cufflinks 0.335        
cufflinks 0.524        
cufflinks 0.543        
cufflinks 0.285       Low
cufflinks 0.462        
cufflinks 0.271       Low

0 Strain