Gene : Glyma.12G047700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12970 - TUMOR NECROSIS FACTOR SUPERFAMILY, MEMBER 5-INDUCED PROTEIN 1 CLAST3 Genomic Order:  477
Name:  ? Glyma.12G047700 Secondary Identifier:  ? PAC:30546869
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G047700 0.5kb upstream 0.5kb upstream 4298 true Chr12: 3447631-3451928 Glycine max
Glyma.12G047700 0.5kb upstream 0.5kb upstream 500 false Chr12: 3451429-3451928 Glycine max
Glyma.12G047700 0.5kb downstream 0.5kb downstream 4298 true Chr12: 3447131-3451428 Glycine max
Glyma.12G047700 0.5kb downstream 0.5kb downstream 500 false Chr12: 3447131-3447630 Glycine max
Glyma.12G047700 1.0kb upstream 1.0kb upstream 4798 true Chr12: 3447631-3452428 Glycine max
Glyma.12G047700 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3451429-3452428 Glycine max
Glyma.12G047700 1.0kb downstream 1.0kb downstream 4798 true Chr12: 3446631-3451428 Glycine max
Glyma.12G047700 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3446631-3447630 Glycine max
Glyma.12G047700 2.0kb upstream 2.0kb upstream 5798 true Chr12: 3447631-3453428 Glycine max
Glyma.12G047700 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3451429-3453428 Glycine max
Glyma.12G047700 2.0kb downstream 2.0kb downstream 5798 true Chr12: 3445631-3451428 Glycine max
Glyma.12G047700 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3445631-3447630 Glycine max
Glyma.12G047700 5.0kb upstream 5.0kb upstream 8798 true Chr12: 3447631-3456428 Glycine max
Glyma.12G047700 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3451429-3456428 Glycine max
Glyma.12G047700 5.0kb downstream 5.0kb downstream 8798 true Chr12: 3442631-3451428 Glycine max
Glyma.12G047700 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3442631-3447630 Glycine max
Glyma.12G047700 10.0kb upstream 10.0kb upstream 13798 true Chr12: 3447631-3461428 Glycine max
Glyma.12G047700 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3451429-3461428 Glycine max
Glyma.12G047700 10.0kb downstream 10.0kb downstream 13798 true Chr12: 3437631-3451428 Glycine max
Glyma.12G047700 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3437631-3447630 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301325 5265 Fabidae View MSA
124073365 5270 Rosid View MSA
123738870 5271 Pentapetalae View MSA
122790398 5272 Eudicot View MSA
122043036 5273 Angiosperm View MSA
121344362 5274 Embryophyte View MSA
123425402 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.03499 0.0 6.9655   Low
cufflinks 4.94599 0.0 14.9871    
cufflinks 3.02572 0.0 9.7901   Low
cufflinks 8.32689 0.0 23.5686   High
cufflinks 5.73304 0.0 17.0905    
cufflinks 5.8778 0.0 17.4222    
cufflinks 5.04565 0.0 15.3284    
cufflinks 6.3223 0.0 18.5104    
cufflinks 4.12582 0.0 12.8495    
cufflinks 2.769       High
cufflinks 1.023       Low
cufflinks 1.889        
cufflinks 3.053       High
cufflinks 4.296       High
cufflinks 0.757       Low
cufflinks 1.564        
cufflinks 1.295        
cufflinks 2.349        
cufflinks 2.692       High
cufflinks 1.35        
cufflinks 1.237        
cufflinks 1.458        
cufflinks 1.821        
cufflinks 1.664        
cufflinks 1.672        
cufflinks 1.584        

0 Strain