Gene : Glyma.12G048300 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  483
Name:  ? Glyma.12G048300 Secondary Identifier:  ? PAC:30546071
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G048300 0.5kb upstream 0.5kb upstream 2955 true Chr12: 3491417-3494371 Glycine max
Glyma.12G048300 0.5kb upstream 0.5kb upstream 500 false Chr12: 3491417-3491916 Glycine max
Glyma.12G048300 0.5kb downstream 0.5kb downstream 2955 true Chr12: 3491917-3494871 Glycine max
Glyma.12G048300 0.5kb downstream 0.5kb downstream 500 false Chr12: 3494372-3494871 Glycine max
Glyma.12G048300 1.0kb upstream 1.0kb upstream 3455 true Chr12: 3490917-3494371 Glycine max
Glyma.12G048300 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3490917-3491916 Glycine max
Glyma.12G048300 1.0kb downstream 1.0kb downstream 3455 true Chr12: 3491917-3495371 Glycine max
Glyma.12G048300 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3494372-3495371 Glycine max
Glyma.12G048300 2.0kb upstream 2.0kb upstream 4455 true Chr12: 3489917-3494371 Glycine max
Glyma.12G048300 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3489917-3491916 Glycine max
Glyma.12G048300 2.0kb downstream 2.0kb downstream 4455 true Chr12: 3491917-3496371 Glycine max
Glyma.12G048300 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3494372-3496371 Glycine max
Glyma.12G048300 5.0kb upstream 5.0kb upstream 7455 true Chr12: 3486917-3494371 Glycine max
Glyma.12G048300 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3486917-3491916 Glycine max
Glyma.12G048300 5.0kb downstream 5.0kb downstream 7455 true Chr12: 3491917-3499371 Glycine max
Glyma.12G048300 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3494372-3499371 Glycine max
Glyma.12G048300 10.0kb upstream 10.0kb upstream 12455 true Chr12: 3481917-3494371 Glycine max
Glyma.12G048300 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3481917-3491916 Glycine max
Glyma.12G048300 10.0kb downstream 10.0kb downstream 12455 true Chr12: 3491917-3504371 Glycine max
Glyma.12G048300 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3494372-3504371 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302151 5265 Fabidae View MSA
124063901 5270 Rosid View MSA
123741231 5271 Pentapetalae View MSA
122791592 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.93534 0.0 3.24552    
cufflinks 0.846164 0.0 2.95934    
cufflinks 0.467299 0.0 1.70008    
cufflinks 0.654659 0.0 2.33555    
cufflinks 0.915309 0.0 3.18626    
cufflinks 0.290883 0.0 1.08834 Low Low
cufflinks 1.18278 0.0 4.00575   High
cufflinks 0.766847 0.0 2.70168    
cufflinks 0.761565 0.0 2.68661    
cufflinks 0.633        
cufflinks 0.237       Low
cufflinks 0.757        
cufflinks 1.134       High
cufflinks 1.361       High
cufflinks 0.463        
cufflinks 0.66        
cufflinks 0.362        
cufflinks 0.609        
cufflinks 1.07       High
cufflinks 0.496        
cufflinks 0.319       Low
cufflinks 0.587        
cufflinks 0.74        
cufflinks 0.294       Low
cufflinks 0.729        
cufflinks 0.466        

0 Strain