Gene : Glyma.12G049600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22957:SF26 - PROTEIN TBC-3, ISOFORM B Genomic Order:  496
Name:  ? Glyma.12G049600 Secondary Identifier:  ? PAC:30548017
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G049600 0.5kb upstream 0.5kb upstream 6050 true Chr12: 3552119-3558168 Glycine max
Glyma.12G049600 0.5kb upstream 0.5kb upstream 500 false Chr12: 3557669-3558168 Glycine max
Glyma.12G049600 0.5kb downstream 0.5kb downstream 6050 true Chr12: 3551619-3557668 Glycine max
Glyma.12G049600 0.5kb downstream 0.5kb downstream 500 false Chr12: 3551619-3552118 Glycine max
Glyma.12G049600 1.0kb upstream 1.0kb upstream 6550 true Chr12: 3552119-3558668 Glycine max
Glyma.12G049600 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3557669-3558668 Glycine max
Glyma.12G049600 1.0kb downstream 1.0kb downstream 6550 true Chr12: 3551119-3557668 Glycine max
Glyma.12G049600 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3551119-3552118 Glycine max
Glyma.12G049600 2.0kb upstream 2.0kb upstream 7550 true Chr12: 3552119-3559668 Glycine max
Glyma.12G049600 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3557669-3559668 Glycine max
Glyma.12G049600 2.0kb downstream 2.0kb downstream 7550 true Chr12: 3550119-3557668 Glycine max
Glyma.12G049600 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3550119-3552118 Glycine max
Glyma.12G049600 5.0kb upstream 5.0kb upstream 10550 true Chr12: 3552119-3562668 Glycine max
Glyma.12G049600 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3557669-3562668 Glycine max
Glyma.12G049600 5.0kb downstream 5.0kb downstream 10550 true Chr12: 3547119-3557668 Glycine max
Glyma.12G049600 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3547119-3552118 Glycine max
Glyma.12G049600 10.0kb upstream 10.0kb upstream 15550 true Chr12: 3552119-3567668 Glycine max
Glyma.12G049600 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3557669-3567668 Glycine max
Glyma.12G049600 10.0kb downstream 10.0kb downstream 15550 true Chr12: 3542119-3557668 Glycine max
Glyma.12G049600 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3542119-3552118 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239860 5265 Fabidae Singleton cluster - no MSA
124067650 5270 Rosid View MSA
123749842 5271 Pentapetalae View MSA
122786792 5272 Eudicot View MSA
122047637 5273 Angiosperm View MSA
121347047 5274 Embryophyte View MSA
123426413 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.77467 0.0 25.7672    
cufflinks 4.95122 0.0 18.8832   Low
cufflinks 8.60496 0.0 31.0633   High
cufflinks 7.97084 0.0 29.5669    
cufflinks 6.79218 0.0 23.6879    
cufflinks 7.405 0.0 25.3666    
cufflinks 6.13068 0.0 22.0859    
cufflinks 7.91856 0.0 28.9418    
cufflinks 8.19141 0.0 29.8135    
cufflinks 1.035        
cufflinks 1.18        
cufflinks 1.315       High
cufflinks 1.225        
cufflinks 0.929       Low
cufflinks 1.472       High
cufflinks 0.975        
cufflinks 1.321       High
cufflinks 1.183        
cufflinks 1.026        
cufflinks 0.936       Low
cufflinks 1.198        
cufflinks 1.023        
cufflinks 0.9       Low
cufflinks 1.03        
cufflinks 0.942       Low
cufflinks 1.042        

0 Strain