Gene : Glyma.12G042600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10920:SF13 - PRE-RRNA PROCESSING PROTEIN FTSJ3 Genomic Order:  426
Name:  ? Glyma.12G042600 Secondary Identifier:  ? PAC:30546606
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G042600 0.5kb upstream 0.5kb upstream 5387 true Chr12: 3078289-3083675 Glycine max
Glyma.12G042600 0.5kb upstream 0.5kb upstream 500 false Chr12: 3078289-3078788 Glycine max
Glyma.12G042600 0.5kb downstream 0.5kb downstream 5387 true Chr12: 3078789-3084175 Glycine max
Glyma.12G042600 0.5kb downstream 0.5kb downstream 500 false Chr12: 3083676-3084175 Glycine max
Glyma.12G042600 1.0kb upstream 1.0kb upstream 5887 true Chr12: 3077789-3083675 Glycine max
Glyma.12G042600 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3077789-3078788 Glycine max
Glyma.12G042600 1.0kb downstream 1.0kb downstream 5887 true Chr12: 3078789-3084675 Glycine max
Glyma.12G042600 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3083676-3084675 Glycine max
Glyma.12G042600 2.0kb upstream 2.0kb upstream 6887 true Chr12: 3076789-3083675 Glycine max
Glyma.12G042600 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3076789-3078788 Glycine max
Glyma.12G042600 2.0kb downstream 2.0kb downstream 6887 true Chr12: 3078789-3085675 Glycine max
Glyma.12G042600 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3083676-3085675 Glycine max
Glyma.12G042600 5.0kb upstream 5.0kb upstream 9887 true Chr12: 3073789-3083675 Glycine max
Glyma.12G042600 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3073789-3078788 Glycine max
Glyma.12G042600 5.0kb downstream 5.0kb downstream 9887 true Chr12: 3078789-3088675 Glycine max
Glyma.12G042600 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3083676-3088675 Glycine max
Glyma.12G042600 10.0kb upstream 10.0kb upstream 14887 true Chr12: 3068789-3083675 Glycine max
Glyma.12G042600 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3068789-3078788 Glycine max
Glyma.12G042600 10.0kb downstream 10.0kb downstream 14887 true Chr12: 3078789-3093675 Glycine max
Glyma.12G042600 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3083676-3093675 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303190 5265 Fabidae View MSA
124066192 5270 Rosid View MSA
123747132 5271 Pentapetalae View MSA
122787166 5272 Eudicot View MSA
122043455 5273 Angiosperm View MSA
121347110 5274 Embryophyte View MSA
123425494 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.2421 0.0 27.3566    
cufflinks 7.33122 0.0 19.5952    
cufflinks 3.64559 0.0 10.0986   Low
cufflinks 7.33679 0.0 19.6025    
cufflinks 10.0775 0.0 26.9122    
cufflinks 3.09074 0.0 8.72058   Low
cufflinks 9.20501 0.0 24.5605    
cufflinks 9.00181 0.0 24.0173    
cufflinks 5.41614 0.0 14.6261    
cufflinks 6.022        
cufflinks 2.95       Low
cufflinks 5.495        
cufflinks 7.467     High  
cufflinks 10.608     High High
cufflinks 3.666       Low
cufflinks 6.511        
cufflinks 4.314        
cufflinks 5.25        
cufflinks 7.747     High High
cufflinks 5.061        
cufflinks 4.079        
cufflinks 5.413        
cufflinks 6.653        
cufflinks 2.75       Low
cufflinks 5.822        
cufflinks 6.052        

0 Strain