Gene : Glyma.12G033900 G. max Wm82.a2.v1
Defline:  (1 of 252) PF02519 - Auxin responsive protein (Auxin_inducible) Genomic Order:  339
Name:  ? Glyma.12G033900 Secondary Identifier:  ? PAC:30546639
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G033900 0.5kb upstream 0.5kb upstream 1460 true Chr12: 2559893-2561352 Glycine max
Glyma.12G033900 0.5kb upstream 0.5kb upstream 500 false Chr12: 2560853-2561352 Glycine max
Glyma.12G033900 0.5kb downstream 0.5kb downstream 1460 true Chr12: 2559393-2560852 Glycine max
Glyma.12G033900 0.5kb downstream 0.5kb downstream 500 false Chr12: 2559393-2559892 Glycine max
Glyma.12G033900 1.0kb upstream 1.0kb upstream 1960 true Chr12: 2559893-2561852 Glycine max
Glyma.12G033900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 2560853-2561852 Glycine max
Glyma.12G033900 1.0kb downstream 1.0kb downstream 1960 true Chr12: 2558893-2560852 Glycine max
Glyma.12G033900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 2558893-2559892 Glycine max
Glyma.12G033900 2.0kb upstream 2.0kb upstream 2960 true Chr12: 2559893-2562852 Glycine max
Glyma.12G033900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 2560853-2562852 Glycine max
Glyma.12G033900 2.0kb downstream 2.0kb downstream 2960 true Chr12: 2557893-2560852 Glycine max
Glyma.12G033900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 2557893-2559892 Glycine max
Glyma.12G033900 5.0kb upstream 5.0kb upstream 5960 true Chr12: 2559893-2565852 Glycine max
Glyma.12G033900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 2560853-2565852 Glycine max
Glyma.12G033900 5.0kb downstream 5.0kb downstream 5960 true Chr12: 2554893-2560852 Glycine max
Glyma.12G033900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 2554893-2559892 Glycine max
Glyma.12G033900 10.0kb upstream 10.0kb upstream 10960 true Chr12: 2559893-2570852 Glycine max
Glyma.12G033900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 2560853-2570852 Glycine max
Glyma.12G033900 10.0kb downstream 10.0kb downstream 10960 true Chr12: 2549893-2560852 Glycine max
Glyma.12G033900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 2549893-2559892 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312618 5265 Fabidae View MSA
124073380 5270 Rosid View MSA
123753786 5271 Pentapetalae View MSA
122797448 5272 Eudicot View MSA
122051602 5273 Angiosperm View MSA
121351344 5274 Embryophyte View MSA
123382129 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0304139 0.0 0.137547 Low Low
cufflinks 0.143229 0.0 0.57832 Low  
cufflinks 2.45 0.0 8.62482   High
cufflinks 0.399436 0.0 1.55172    
cufflinks 0.364071 0.0 1.42167    
cufflinks 0.22268 0.0 0.884378 Low  
cufflinks 0.0535391 0.0 0.230588 Low Low
cufflinks 1.31784 0.0 4.84504   High
cufflinks 0.146946 0.0 0.592614 Low  
cufflinks 8.485     High High
cufflinks 0.297        
cufflinks 1.104       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.039     Low Low
cufflinks 0.114        
cufflinks 0.117        
cufflinks 0.086     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.091     Low  
cufflinks 0.292        
cufflinks 0.056     Low  
cufflinks 0.036     Low Low
cufflinks 0.218        
cufflinks 0.191        
cufflinks 0.478        

0 Strain