Gene : Glyma.12G028400 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG2994 - Uracil DNA glycosylase Genomic Order:  284
Name:  ? Glyma.12G028400 Secondary Identifier:  ? PAC:30548522
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G028400 0.5kb upstream 0.5kb upstream 4948 true Chr12: 2124497-2129444 Glycine max
Glyma.12G028400 0.5kb upstream 0.5kb upstream 500 false Chr12: 2128945-2129444 Glycine max
Glyma.12G028400 0.5kb downstream 0.5kb downstream 4948 true Chr12: 2123997-2128944 Glycine max
Glyma.12G028400 0.5kb downstream 0.5kb downstream 500 false Chr12: 2123997-2124496 Glycine max
Glyma.12G028400 1.0kb upstream 1.0kb upstream 5448 true Chr12: 2124497-2129944 Glycine max
Glyma.12G028400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 2128945-2129944 Glycine max
Glyma.12G028400 1.0kb downstream 1.0kb downstream 5448 true Chr12: 2123497-2128944 Glycine max
Glyma.12G028400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 2123497-2124496 Glycine max
Glyma.12G028400 2.0kb upstream 2.0kb upstream 6448 true Chr12: 2124497-2130944 Glycine max
Glyma.12G028400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 2128945-2130944 Glycine max
Glyma.12G028400 2.0kb downstream 2.0kb downstream 6448 true Chr12: 2122497-2128944 Glycine max
Glyma.12G028400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 2122497-2124496 Glycine max
Glyma.12G028400 5.0kb upstream 5.0kb upstream 9448 true Chr12: 2124497-2133944 Glycine max
Glyma.12G028400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 2128945-2133944 Glycine max
Glyma.12G028400 5.0kb downstream 5.0kb downstream 9448 true Chr12: 2119497-2128944 Glycine max
Glyma.12G028400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 2119497-2124496 Glycine max
Glyma.12G028400 10.0kb upstream 10.0kb upstream 14448 true Chr12: 2124497-2138944 Glycine max
Glyma.12G028400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 2128945-2138944 Glycine max
Glyma.12G028400 10.0kb downstream 10.0kb downstream 14448 true Chr12: 2114497-2128944 Glycine max
Glyma.12G028400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 2114497-2124496 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300335 5265 Fabidae View MSA
124061945 5270 Rosid View MSA
123739196 5271 Pentapetalae View MSA
122790094 5272 Eudicot View MSA
122041709 5273 Angiosperm View MSA
121351244 5274 Embryophyte View MSA
123426382 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.59317 0.0 15.1626   Low
cufflinks 13.9263 0.0 48.7806   High
cufflinks 6.81265 0.0 23.6646    
cufflinks 4.71628 0.0 18.1208    
cufflinks 5.57067 0.0 20.369    
cufflinks 4.51144 0.0 17.6561    
cufflinks 4.12073 0.0 16.5755    
cufflinks 4.2429 0.0 16.8294    
cufflinks 5.77167 0.0 20.8775    
cufflinks 0.492        
cufflinks 0.167       Low
cufflinks 1.168        
cufflinks 0.808        
cufflinks 1.032        
cufflinks 0.256        
cufflinks 0.558        
cufflinks 0.34        
cufflinks 0.743        
cufflinks 2.313       High
cufflinks 0.56        
cufflinks 0.196       Low
cufflinks 0.61        
cufflinks 2.047       High
cufflinks 0.265        
cufflinks 0.559        
cufflinks 0.229       Low

0 Strain