Gene : Glyma.12G065700 G. max Wm82.a2.v1
Defline:  (1 of 40) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  657
Name:  ? Glyma.12G065700 Secondary Identifier:  ? PAC:30547927
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G065700 0.5kb upstream 0.5kb upstream 4453 true Chr12: 4824810-4829262 Glycine max
Glyma.12G065700 0.5kb upstream 0.5kb upstream 500 false Chr12: 4828763-4829262 Glycine max
Glyma.12G065700 0.5kb downstream 0.5kb downstream 4453 true Chr12: 4824310-4828762 Glycine max
Glyma.12G065700 0.5kb downstream 0.5kb downstream 500 false Chr12: 4824310-4824809 Glycine max
Glyma.12G065700 1.0kb upstream 1.0kb upstream 4953 true Chr12: 4824810-4829762 Glycine max
Glyma.12G065700 1.0kb upstream 1.0kb upstream 1000 false Chr12: 4828763-4829762 Glycine max
Glyma.12G065700 1.0kb downstream 1.0kb downstream 4953 true Chr12: 4823810-4828762 Glycine max
Glyma.12G065700 1.0kb downstream 1.0kb downstream 1000 false Chr12: 4823810-4824809 Glycine max
Glyma.12G065700 2.0kb upstream 2.0kb upstream 5953 true Chr12: 4824810-4830762 Glycine max
Glyma.12G065700 2.0kb upstream 2.0kb upstream 2000 false Chr12: 4828763-4830762 Glycine max
Glyma.12G065700 2.0kb downstream 2.0kb downstream 5953 true Chr12: 4822810-4828762 Glycine max
Glyma.12G065700 2.0kb downstream 2.0kb downstream 2000 false Chr12: 4822810-4824809 Glycine max
Glyma.12G065700 5.0kb upstream 5.0kb upstream 8953 true Chr12: 4824810-4833762 Glycine max
Glyma.12G065700 5.0kb upstream 5.0kb upstream 5000 false Chr12: 4828763-4833762 Glycine max
Glyma.12G065700 5.0kb downstream 5.0kb downstream 8953 true Chr12: 4819810-4828762 Glycine max
Glyma.12G065700 5.0kb downstream 5.0kb downstream 5000 false Chr12: 4819810-4824809 Glycine max
Glyma.12G065700 10.0kb upstream 10.0kb upstream 13953 true Chr12: 4824810-4838762 Glycine max
Glyma.12G065700 10.0kb upstream 10.0kb upstream 10000 false Chr12: 4828763-4838762 Glycine max
Glyma.12G065700 10.0kb downstream 10.0kb downstream 13953 true Chr12: 4814810-4828762 Glycine max
Glyma.12G065700 10.0kb downstream 10.0kb downstream 10000 false Chr12: 4814810-4824809 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309449 5265 Fabidae View MSA
124065450 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.13595 0.0 29.0454    
cufflinks 5.56921 0.0 21.7781    
cufflinks 10.6917 0.0 45.1336   High
cufflinks 5.89895 0.0 25.2423    
cufflinks 3.3068 0.0 13.0273   Low
cufflinks 5.46865 0.0 21.4449    
cufflinks 5.50877 0.0 24.3747    
cufflinks 5.62672 0.0 24.7822    
cufflinks 5.54006 0.0 24.6665    
cufflinks 0.441       Low
cufflinks 0.619        
cufflinks 1.317       High
cufflinks 0.473        
cufflinks 0.317       Low
cufflinks 0.449       Low
cufflinks 0.891        
cufflinks 0.506        
cufflinks 1.016        
cufflinks 0.824        
cufflinks 1.069       High
cufflinks 0.546        
cufflinks 1.111       High
cufflinks 0.885        
cufflinks 0.834        
cufflinks 1.015        
cufflinks 0.533        

0 Strain