Gene : Glyma.12G071100 G. max Wm82.a2.v1
Defline:  (1 of 2) 1.3.99.12 - 2-methylacyl-CoA dehydrogenase / Branched-chain acyl-CoA dehydrogenase Genomic Order:  711
Name:  ? Glyma.12G071100 Secondary Identifier:  ? PAC:30546186
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax LEU-DEG2-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G071100 0.5kb upstream 0.5kb upstream 14177 true Chr12: 5204211-5218387 Glycine max
Glyma.12G071100 0.5kb upstream 0.5kb upstream 500 false Chr12: 5217888-5218387 Glycine max
Glyma.12G071100 0.5kb downstream 0.5kb downstream 14177 true Chr12: 5203711-5217887 Glycine max
Glyma.12G071100 0.5kb downstream 0.5kb downstream 500 false Chr12: 5203711-5204210 Glycine max
Glyma.12G071100 1.0kb upstream 1.0kb upstream 14677 true Chr12: 5204211-5218887 Glycine max
Glyma.12G071100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 5217888-5218887 Glycine max
Glyma.12G071100 1.0kb downstream 1.0kb downstream 14677 true Chr12: 5203211-5217887 Glycine max
Glyma.12G071100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 5203211-5204210 Glycine max
Glyma.12G071100 2.0kb upstream 2.0kb upstream 15677 true Chr12: 5204211-5219887 Glycine max
Glyma.12G071100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 5217888-5219887 Glycine max
Glyma.12G071100 2.0kb downstream 2.0kb downstream 15677 true Chr12: 5202211-5217887 Glycine max
Glyma.12G071100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 5202211-5204210 Glycine max
Glyma.12G071100 5.0kb upstream 5.0kb upstream 18677 true Chr12: 5204211-5222887 Glycine max
Glyma.12G071100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 5217888-5222887 Glycine max
Glyma.12G071100 5.0kb downstream 5.0kb downstream 18677 true Chr12: 5199211-5217887 Glycine max
Glyma.12G071100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 5199211-5204210 Glycine max
Glyma.12G071100 10.0kb upstream 10.0kb upstream 23677 true Chr12: 5204211-5227887 Glycine max
Glyma.12G071100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 5217888-5227887 Glycine max
Glyma.12G071100 10.0kb downstream 10.0kb downstream 23677 true Chr12: 5194211-5217887 Glycine max
Glyma.12G071100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 5194211-5204210 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300577 5265 Fabidae View MSA
124064222 5270 Rosid View MSA
123745101 5271 Pentapetalae View MSA
122788646 5272 Eudicot View MSA
122042062 5273 Angiosperm View MSA
121346887 5274 Embryophyte View MSA
123427095 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.01439 0.0 11.0991    
cufflinks 5.69962 0.0 23.661   High
cufflinks 2.64185 0.0 8.90536   Low
cufflinks 3.71422 0.0 17.2841    
cufflinks 4.80061 0.0 14.5744   High
cufflinks 3.66749 0.0 12.8862    
cufflinks 2.87 0.0 10.7477    
cufflinks 3.9118 0.0 16.6506    
cufflinks 3.32617 0.0 10.6651    
cufflinks 0.454       Low
cufflinks 1.675       High
cufflinks 1.077        
cufflinks 1.012        
cufflinks 1.159        
cufflinks 0.777        
cufflinks 0.532        
cufflinks 0.442       Low
cufflinks 1.065        
cufflinks 0.702        
cufflinks 0.692        
cufflinks 0.964        
cufflinks 0.577        
cufflinks 0.436       Low
cufflinks 1.332       High
cufflinks 0.666        
cufflinks 0.856        

0 Strain