Gene : Glyma.12G061400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23076//PTHR23076:SF69 - METALLOPROTEASE M41 FTSH Genomic Order:  614
Name:  ? Glyma.12G061400 Secondary Identifier:  ? PAC:30548262
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Ontology Annotation Displayer

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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G061400 0.5kb upstream 0.5kb upstream 11063 true Chr12: 4468847-4479909 Glycine max
Glyma.12G061400 0.5kb upstream 0.5kb upstream 500 false Chr12: 4468847-4469346 Glycine max
Glyma.12G061400 0.5kb downstream 0.5kb downstream 11063 true Chr12: 4469347-4480409 Glycine max
Glyma.12G061400 0.5kb downstream 0.5kb downstream 500 false Chr12: 4479910-4480409 Glycine max
Glyma.12G061400 1.0kb upstream 1.0kb upstream 11563 true Chr12: 4468347-4479909 Glycine max
Glyma.12G061400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 4468347-4469346 Glycine max
Glyma.12G061400 1.0kb downstream 1.0kb downstream 11563 true Chr12: 4469347-4480909 Glycine max
Glyma.12G061400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 4479910-4480909 Glycine max
Glyma.12G061400 2.0kb upstream 2.0kb upstream 12563 true Chr12: 4467347-4479909 Glycine max
Glyma.12G061400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 4467347-4469346 Glycine max
Glyma.12G061400 2.0kb downstream 2.0kb downstream 12563 true Chr12: 4469347-4481909 Glycine max
Glyma.12G061400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 4479910-4481909 Glycine max
Glyma.12G061400 5.0kb upstream 5.0kb upstream 15563 true Chr12: 4464347-4479909 Glycine max
Glyma.12G061400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 4464347-4469346 Glycine max
Glyma.12G061400 5.0kb downstream 5.0kb downstream 15563 true Chr12: 4469347-4484909 Glycine max
Glyma.12G061400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 4479910-4484909 Glycine max
Glyma.12G061400 10.0kb upstream 10.0kb upstream 20563 true Chr12: 4459347-4479909 Glycine max
Glyma.12G061400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 4459347-4469346 Glycine max
Glyma.12G061400 10.0kb downstream 10.0kb downstream 20563 true Chr12: 4469347-4489909 Glycine max
Glyma.12G061400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 4479910-4489909 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306311 5265 Fabidae View MSA
124064309 5270 Rosid View MSA
123736600 5271 Pentapetalae View MSA
122793293 5272 Eudicot View MSA
122047667 5273 Angiosperm View MSA
121345143 5274 Embryophyte View MSA
123426820 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.61496 0.0 10.1772    
cufflinks 1.12605 0.0 3.70702   Low
cufflinks 3.69374 0.0 10.3551    
cufflinks 3.18841 0.0 9.0886    
cufflinks 3.25285 0.0 9.26606    
cufflinks 2.96129 0.0 8.52107    
cufflinks 3.89239 0.0 10.8791    
cufflinks 1.44398 0.0 4.59062   Low
cufflinks 2.94667 0.0 8.49193    
cufflinks 0.367        
cufflinks 0.31       Low
cufflinks 1.476        
cufflinks 1.908       High
cufflinks 1.107        
cufflinks 0.275       Low
cufflinks 1.361        
cufflinks 0.467        
cufflinks 3.04       High
cufflinks 0.536        
cufflinks 1.665        
cufflinks 0.28       Low
cufflinks 1.747        
cufflinks 1.326        
cufflinks 0.297       Low
cufflinks 1.413        
cufflinks 0.449        

0 Strain