Gene : Glyma.12G062200 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR31636:SF54 - SCARECROW-LIKE PROTEIN 14-RELATED Genomic Order:  622
Name:  ? Glyma.12G062200 Secondary Identifier:  ? PAC:30546836
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G062200 0.5kb upstream 0.5kb upstream 3753 true Chr12: 4544440-4548192 Glycine max
Glyma.12G062200 0.5kb upstream 0.5kb upstream 500 false Chr12: 4547693-4548192 Glycine max
Glyma.12G062200 0.5kb downstream 0.5kb downstream 3753 true Chr12: 4543940-4547692 Glycine max
Glyma.12G062200 0.5kb downstream 0.5kb downstream 500 false Chr12: 4543940-4544439 Glycine max
Glyma.12G062200 1.0kb upstream 1.0kb upstream 4253 true Chr12: 4544440-4548692 Glycine max
Glyma.12G062200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 4547693-4548692 Glycine max
Glyma.12G062200 1.0kb downstream 1.0kb downstream 4253 true Chr12: 4543440-4547692 Glycine max
Glyma.12G062200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 4543440-4544439 Glycine max
Glyma.12G062200 2.0kb upstream 2.0kb upstream 5253 true Chr12: 4544440-4549692 Glycine max
Glyma.12G062200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 4547693-4549692 Glycine max
Glyma.12G062200 2.0kb downstream 2.0kb downstream 5253 true Chr12: 4542440-4547692 Glycine max
Glyma.12G062200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 4542440-4544439 Glycine max
Glyma.12G062200 5.0kb upstream 5.0kb upstream 8253 true Chr12: 4544440-4552692 Glycine max
Glyma.12G062200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 4547693-4552692 Glycine max
Glyma.12G062200 5.0kb downstream 5.0kb downstream 8253 true Chr12: 4539440-4547692 Glycine max
Glyma.12G062200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 4539440-4544439 Glycine max
Glyma.12G062200 10.0kb upstream 10.0kb upstream 13253 true Chr12: 4544440-4557692 Glycine max
Glyma.12G062200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 4547693-4557692 Glycine max
Glyma.12G062200 10.0kb downstream 10.0kb downstream 13253 true Chr12: 4534440-4547692 Glycine max
Glyma.12G062200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 4534440-4544439 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310548 5265 Fabidae View MSA
124064639 5270 Rosid View MSA
123750613 5271 Pentapetalae View MSA
122790030 5272 Eudicot View MSA
122048011 5273 Angiosperm View MSA
121350999 5274 Embryophyte View MSA
123381964 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.74032 0.0 5.38053    
cufflinks 1.8806 0.0 5.74946    
cufflinks 2.57471 0.0 7.51918   High
cufflinks 1.88349 0.0 5.75094    
cufflinks 1.18491 0.0 3.8697   Low
cufflinks 1.28506 0.0 4.14482   Low
cufflinks 1.54012 0.0 4.84906    
cufflinks 2.10299 0.0 6.31353    
cufflinks 1.2816 0.0 4.13254   Low
cufflinks 2.132       High
cufflinks 0.96        
cufflinks 2.404       High
cufflinks 1.732        
cufflinks 1.321        
cufflinks 1.722        
cufflinks 1.666        
cufflinks 0.741       Low
cufflinks 2.387       High
cufflinks 2.029        
cufflinks 1.798        
cufflinks 0.779       Low
cufflinks 1.942        
cufflinks 1.343        
cufflinks 0.85       Low
cufflinks 1.213        
cufflinks 0.785       Low

0 Strain