Gene : Glyma.12G053100 G. max Wm82.a2.v1
Defline:  (1 of 1) PF00633 - Helix-hairpin-helix motif (HHH) Genomic Order:  531
Name:  ? Glyma.12G053100 Secondary Identifier:  ? PAC:30546522
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G053100 0.5kb upstream 0.5kb upstream 2266 true Chr12: 3818824-3821089 Glycine max
Glyma.12G053100 0.5kb upstream 0.5kb upstream 500 false Chr12: 3818824-3819323 Glycine max
Glyma.12G053100 0.5kb downstream 0.5kb downstream 2266 true Chr12: 3819324-3821589 Glycine max
Glyma.12G053100 0.5kb downstream 0.5kb downstream 500 false Chr12: 3821090-3821589 Glycine max
Glyma.12G053100 1.0kb upstream 1.0kb upstream 2766 true Chr12: 3818324-3821089 Glycine max
Glyma.12G053100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3818324-3819323 Glycine max
Glyma.12G053100 1.0kb downstream 1.0kb downstream 2766 true Chr12: 3819324-3822089 Glycine max
Glyma.12G053100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3821090-3822089 Glycine max
Glyma.12G053100 2.0kb upstream 2.0kb upstream 3766 true Chr12: 3817324-3821089 Glycine max
Glyma.12G053100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3817324-3819323 Glycine max
Glyma.12G053100 2.0kb downstream 2.0kb downstream 3766 true Chr12: 3819324-3823089 Glycine max
Glyma.12G053100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3821090-3823089 Glycine max
Glyma.12G053100 5.0kb upstream 5.0kb upstream 6766 true Chr12: 3814324-3821089 Glycine max
Glyma.12G053100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3814324-3819323 Glycine max
Glyma.12G053100 5.0kb downstream 5.0kb downstream 6766 true Chr12: 3819324-3826089 Glycine max
Glyma.12G053100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3821090-3826089 Glycine max
Glyma.12G053100 10.0kb upstream 10.0kb upstream 11766 true Chr12: 3809324-3821089 Glycine max
Glyma.12G053100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3809324-3819323 Glycine max
Glyma.12G053100 10.0kb downstream 10.0kb downstream 11766 true Chr12: 3819324-3831089 Glycine max
Glyma.12G053100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3821090-3831089 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041361 5273 Angiosperm View MSA
122240059 5265 Fabidae Singleton cluster - no MSA
123985190 5270 Rosid Singleton cluster - no MSA
123560637 5271 Pentapetalae Singleton cluster - no MSA
122595434 5272 Eudicot Singleton cluster - no MSA
121344873 5274 Embryophyte View MSA
123425670 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0645434 0.0 0.291929 Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.066       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low  
cufflinks 0.006     Low Low
cufflinks 0.044     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.011     Low  
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain