Gene : Glyma.12G053400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR24349:SF160 - CALCIUM-DEPENDENT PROTEIN KINASE 24 Genomic Order:  534
Name:  ? Glyma.12G053400 Secondary Identifier:  ? PAC:30546048
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G053400 0.5kb upstream 0.5kb upstream 5216 true Chr12: 3831169-3836384 Glycine max
Glyma.12G053400 0.5kb upstream 0.5kb upstream 500 false Chr12: 3831169-3831668 Glycine max
Glyma.12G053400 0.5kb downstream 0.5kb downstream 5216 true Chr12: 3831669-3836884 Glycine max
Glyma.12G053400 0.5kb downstream 0.5kb downstream 500 false Chr12: 3836385-3836884 Glycine max
Glyma.12G053400 1.0kb upstream 1.0kb upstream 5716 true Chr12: 3830669-3836384 Glycine max
Glyma.12G053400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3830669-3831668 Glycine max
Glyma.12G053400 1.0kb downstream 1.0kb downstream 5716 true Chr12: 3831669-3837384 Glycine max
Glyma.12G053400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3836385-3837384 Glycine max
Glyma.12G053400 2.0kb upstream 2.0kb upstream 6716 true Chr12: 3829669-3836384 Glycine max
Glyma.12G053400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3829669-3831668 Glycine max
Glyma.12G053400 2.0kb downstream 2.0kb downstream 6716 true Chr12: 3831669-3838384 Glycine max
Glyma.12G053400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3836385-3838384 Glycine max
Glyma.12G053400 5.0kb upstream 5.0kb upstream 9716 true Chr12: 3826669-3836384 Glycine max
Glyma.12G053400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3826669-3831668 Glycine max
Glyma.12G053400 5.0kb downstream 5.0kb downstream 9716 true Chr12: 3831669-3841384 Glycine max
Glyma.12G053400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3836385-3841384 Glycine max
Glyma.12G053400 10.0kb upstream 10.0kb upstream 14716 true Chr12: 3821669-3836384 Glycine max
Glyma.12G053400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3821669-3831668 Glycine max
Glyma.12G053400 10.0kb downstream 10.0kb downstream 14716 true Chr12: 3831669-3846384 Glycine max
Glyma.12G053400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3836385-3846384 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779275 5273 Angiosperm View MSA
122301214 5265 Fabidae View MSA
124066973 5270 Rosid View MSA
123741772 5271 Pentapetalae View MSA
122770123 5272 Eudicot View MSA
121050948 5274 Embryophyte View MSA
123091056 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0170193 0.0 0.0725277 Low  
cufflinks 0.033414 0.0 0.136322 Low  
cufflinks 18.7122 0.0 50.3515   High
cufflinks 0.0187325 0.0 0.0793093 Low  
cufflinks 0.0289206 0.0 0.118841 Low  
cufflinks 0.0318311 0.0 0.130142 Low  
cufflinks 3.94963 0.0 11.276   High
cufflinks 0.118654 0.0 0.460439 Low  
cufflinks 0.136426 0.0 0.52617 Low  
cufflinks 0.003     Low Low
cufflinks 0.012     Low  
cufflinks 1.975       High
cufflinks 0.041     Low  
cufflinks 0.022     Low  
cufflinks 0.012     Low  
cufflinks 0.024     Low  
cufflinks 0.01     Low  
cufflinks 3.245       High
cufflinks 0.02     Low  
cufflinks 0.06     Low  
cufflinks 0.004     Low Low
cufflinks 0.021     Low  
cufflinks 0.034     Low  
cufflinks 0.012     Low  
cufflinks 0.032     Low  
cufflinks 0.019     Low  

0 Strain