Gene : Glyma.12G054000 G. max Wm82.a2.v1
Defline:  (1 of 26) PTHR10353//PTHR10353:SF81 - GLYCOSYL HYDROLASE Genomic Order:  540
Name:  ? Glyma.12G054000 Secondary Identifier:  ? PAC:30548196
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3121 Glycine max pathologic  
Gmax PWY-5176 Glycine max pathologic  
Gmax PWY-6002 Glycine max pathologic  
Gmax PWY-7089 Glycine max pathologic  
Gmax PWY-7091 Glycine max pathologic  
Gmax PWY-7092 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G054000 0.5kb upstream 0.5kb upstream 4549 true Chr12: 3894473-3899021 Glycine max
Glyma.12G054000 0.5kb upstream 0.5kb upstream 500 false Chr12: 3894473-3894972 Glycine max
Glyma.12G054000 0.5kb downstream 0.5kb downstream 4549 true Chr12: 3894973-3899521 Glycine max
Glyma.12G054000 0.5kb downstream 0.5kb downstream 500 false Chr12: 3899022-3899521 Glycine max
Glyma.12G054000 1.0kb upstream 1.0kb upstream 5049 true Chr12: 3893973-3899021 Glycine max
Glyma.12G054000 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3893973-3894972 Glycine max
Glyma.12G054000 1.0kb downstream 1.0kb downstream 5049 true Chr12: 3894973-3900021 Glycine max
Glyma.12G054000 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3899022-3900021 Glycine max
Glyma.12G054000 2.0kb upstream 2.0kb upstream 6049 true Chr12: 3892973-3899021 Glycine max
Glyma.12G054000 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3892973-3894972 Glycine max
Glyma.12G054000 2.0kb downstream 2.0kb downstream 6049 true Chr12: 3894973-3901021 Glycine max
Glyma.12G054000 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3899022-3901021 Glycine max
Glyma.12G054000 5.0kb upstream 5.0kb upstream 9049 true Chr12: 3889973-3899021 Glycine max
Glyma.12G054000 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3889973-3894972 Glycine max
Glyma.12G054000 5.0kb downstream 5.0kb downstream 9049 true Chr12: 3894973-3904021 Glycine max
Glyma.12G054000 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3899022-3904021 Glycine max
Glyma.12G054000 10.0kb upstream 10.0kb upstream 14049 true Chr12: 3884973-3899021 Glycine max
Glyma.12G054000 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3884973-3894972 Glycine max
Glyma.12G054000 10.0kb downstream 10.0kb downstream 14049 true Chr12: 3894973-3909021 Glycine max
Glyma.12G054000 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3899022-3909021 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253974 5265 Fabidae View MSA
124071856 5270 Rosid View MSA
123753517 5271 Pentapetalae View MSA
122797747 5272 Eudicot View MSA
122051599 5273 Angiosperm View MSA
121350182 5274 Embryophyte View MSA
123428830 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.15039 0.0 0.588965 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.105004 0.0 0.41554 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 9.98026 0.0 27.3082    
cufflinks 108.442 0.0 338.656 High High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0404503 0.0 0.167514 Low Low
cufflinks 23.8093 0.0 63.6379 High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 111.206     High  
cufflinks 0.011     Low Low
cufflinks 9.828     High  
cufflinks 1.843        
cufflinks 97.722     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 64.702     High  
cufflinks 0.116        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 64.685     High  
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 188.023     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 200.605     High  

0 Strain