Gene : Glyma.12G054100 G. max Wm82.a2.v1
Defline:  (1 of 26) PTHR10353//PTHR10353:SF81 - GLYCOSYL HYDROLASE Genomic Order:  541
Name:  ? Glyma.12G054100 Secondary Identifier:  ? PAC:30547539
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3121 Glycine max pathologic  
Gmax PWY-5176 Glycine max pathologic  
Gmax PWY-6002 Glycine max pathologic  
Gmax PWY-7089 Glycine max pathologic  
Gmax PWY-7091 Glycine max pathologic  
Gmax PWY-7092 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G054100 0.5kb upstream 0.5kb upstream 3351 true Chr12: 3900859-3904209 Glycine max
Glyma.12G054100 0.5kb upstream 0.5kb upstream 500 false Chr12: 3900859-3901358 Glycine max
Glyma.12G054100 0.5kb downstream 0.5kb downstream 3351 true Chr12: 3901359-3904709 Glycine max
Glyma.12G054100 0.5kb downstream 0.5kb downstream 500 false Chr12: 3904210-3904709 Glycine max
Glyma.12G054100 1.0kb upstream 1.0kb upstream 3851 true Chr12: 3900359-3904209 Glycine max
Glyma.12G054100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3900359-3901358 Glycine max
Glyma.12G054100 1.0kb downstream 1.0kb downstream 3851 true Chr12: 3901359-3905209 Glycine max
Glyma.12G054100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3904210-3905209 Glycine max
Glyma.12G054100 2.0kb upstream 2.0kb upstream 4851 true Chr12: 3899359-3904209 Glycine max
Glyma.12G054100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3899359-3901358 Glycine max
Glyma.12G054100 2.0kb downstream 2.0kb downstream 4851 true Chr12: 3901359-3906209 Glycine max
Glyma.12G054100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3904210-3906209 Glycine max
Glyma.12G054100 5.0kb upstream 5.0kb upstream 7851 true Chr12: 3896359-3904209 Glycine max
Glyma.12G054100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3896359-3901358 Glycine max
Glyma.12G054100 5.0kb downstream 5.0kb downstream 7851 true Chr12: 3901359-3909209 Glycine max
Glyma.12G054100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3904210-3909209 Glycine max
Glyma.12G054100 10.0kb upstream 10.0kb upstream 12851 true Chr12: 3891359-3904209 Glycine max
Glyma.12G054100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3891359-3901358 Glycine max
Glyma.12G054100 10.0kb downstream 10.0kb downstream 12851 true Chr12: 3901359-3914209 Glycine max
Glyma.12G054100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3904210-3914209 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315408 5265 Fabidae View MSA
124071856 5270 Rosid View MSA
123753517 5271 Pentapetalae View MSA
122797747 5272 Eudicot View MSA
122051599 5273 Angiosperm View MSA
121350182 5274 Embryophyte View MSA
123428830 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.7266 0.0 53.9117   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0808278 0.0 0.323722 Low  
cufflinks 0.0142054 0.0 0.0689535 Low Low
cufflinks 0.779042 0.0 4.65312    
cufflinks 4.99696 0.0 18.2018    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0130981 0.0 0.0684339 Low Low
cufflinks 0.762497 0.0 3.44348    
cufflinks 0.279        
cufflinks 14.238     High High
cufflinks 0.08     Low  
cufflinks 3.91        
cufflinks 0.398        
cufflinks 2.896        
cufflinks 0.049     Low  
cufflinks 56.799     High High
cufflinks 0.01     Low Low
cufflinks 0.033     Low  
cufflinks 0.003     Low Low
cufflinks 3.435        
cufflinks 0.303        
cufflinks 0.168        
cufflinks 15.48     High High
cufflinks 0.024     Low Low
cufflinks 21.51     High High

0 Strain