Gene : Glyma.12G054700 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR11771:SF42 - PROTEIN C13C4.7 Genomic Order:  547
Name:  ? Glyma.12G054700 Secondary Identifier:  ? PAC:30548902
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G054700 0.5kb upstream 0.5kb upstream 8434 true Chr12: 3949453-3957886 Glycine max
Glyma.12G054700 0.5kb upstream 0.5kb upstream 500 false Chr12: 3957387-3957886 Glycine max
Glyma.12G054700 0.5kb downstream 0.5kb downstream 8434 true Chr12: 3948953-3957386 Glycine max
Glyma.12G054700 0.5kb downstream 0.5kb downstream 500 false Chr12: 3948953-3949452 Glycine max
Glyma.12G054700 1.0kb upstream 1.0kb upstream 8934 true Chr12: 3949453-3958386 Glycine max
Glyma.12G054700 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3957387-3958386 Glycine max
Glyma.12G054700 1.0kb downstream 1.0kb downstream 8934 true Chr12: 3948453-3957386 Glycine max
Glyma.12G054700 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3948453-3949452 Glycine max
Glyma.12G054700 2.0kb upstream 2.0kb upstream 9934 true Chr12: 3949453-3959386 Glycine max
Glyma.12G054700 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3957387-3959386 Glycine max
Glyma.12G054700 2.0kb downstream 2.0kb downstream 9934 true Chr12: 3947453-3957386 Glycine max
Glyma.12G054700 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3947453-3949452 Glycine max
Glyma.12G054700 5.0kb upstream 5.0kb upstream 12934 true Chr12: 3949453-3962386 Glycine max
Glyma.12G054700 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3957387-3962386 Glycine max
Glyma.12G054700 5.0kb downstream 5.0kb downstream 12934 true Chr12: 3944453-3957386 Glycine max
Glyma.12G054700 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3944453-3949452 Glycine max
Glyma.12G054700 10.0kb upstream 10.0kb upstream 17934 true Chr12: 3949453-3967386 Glycine max
Glyma.12G054700 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3957387-3967386 Glycine max
Glyma.12G054700 10.0kb downstream 10.0kb downstream 17934 true Chr12: 3939453-3957386 Glycine max
Glyma.12G054700 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3939453-3949452 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309355 5265 Fabidae View MSA
124069762 5270 Rosid View MSA
123743667 5271 Pentapetalae View MSA
122789767 5272 Eudicot View MSA
122043119 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.7295 0.0 190.223 High High
cufflinks 3.49493 0.0 9.82151    
cufflinks 5.59044 0.0 15.121    
cufflinks 10.8879 0.0 29.0736    
cufflinks 0.181158 0.0 0.682601 Low  
cufflinks 0.01243 0.0 0.0532691 Low Low
cufflinks 0.393906 0.0 1.42543    
cufflinks 9.17722 0.0 24.4849    
cufflinks 1.05592 0.0 3.47762    
cufflinks 1.711        
cufflinks 0.015     Low Low
cufflinks 3.686        
cufflinks 0.002     Low Low
cufflinks 0.005     Low Low
cufflinks 0.198        
cufflinks 6.769        
cufflinks 0.132        
cufflinks 4.139        
cufflinks 0.868        
cufflinks 11.509     High High
cufflinks 0.019     Low  
cufflinks 10.456     High High
cufflinks 12.018     High High
cufflinks 0.024     Low  
cufflinks 9.038     High High
cufflinks 0.035     Low  

0 Strain