Gene : Glyma.12G054800 G. max Wm82.a2.v1
Defline:  (1 of 1) PF00132//PF00501//PF00550 - Bacterial transferase hexapeptide (six repeats) (Hexapep) // AMP-binding enzyme (AMP-binding) // Phosphopantetheine attachment site (PP-binding) Genomic Order:  548
Name:  ? Glyma.12G054800 Secondary Identifier:  ? PAC:30547313
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G054800 0.5kb upstream 0.5kb upstream 6902 true Chr12: 3970774-3977675 Glycine max
Glyma.12G054800 0.5kb upstream 0.5kb upstream 500 false Chr12: 3970774-3971273 Glycine max
Glyma.12G054800 0.5kb downstream 0.5kb downstream 6902 true Chr12: 3971274-3978175 Glycine max
Glyma.12G054800 0.5kb downstream 0.5kb downstream 500 false Chr12: 3977676-3978175 Glycine max
Glyma.12G054800 1.0kb upstream 1.0kb upstream 7402 true Chr12: 3970274-3977675 Glycine max
Glyma.12G054800 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3970274-3971273 Glycine max
Glyma.12G054800 1.0kb downstream 1.0kb downstream 7402 true Chr12: 3971274-3978675 Glycine max
Glyma.12G054800 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3977676-3978675 Glycine max
Glyma.12G054800 2.0kb upstream 2.0kb upstream 8402 true Chr12: 3969274-3977675 Glycine max
Glyma.12G054800 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3969274-3971273 Glycine max
Glyma.12G054800 2.0kb downstream 2.0kb downstream 8402 true Chr12: 3971274-3979675 Glycine max
Glyma.12G054800 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3977676-3979675 Glycine max
Glyma.12G054800 5.0kb upstream 5.0kb upstream 11402 true Chr12: 3966274-3977675 Glycine max
Glyma.12G054800 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3966274-3971273 Glycine max
Glyma.12G054800 5.0kb downstream 5.0kb downstream 11402 true Chr12: 3971274-3982675 Glycine max
Glyma.12G054800 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3977676-3982675 Glycine max
Glyma.12G054800 10.0kb upstream 10.0kb upstream 16402 true Chr12: 3961274-3977675 Glycine max
Glyma.12G054800 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3961274-3971273 Glycine max
Glyma.12G054800 10.0kb downstream 10.0kb downstream 16402 true Chr12: 3971274-3987675 Glycine max
Glyma.12G054800 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3977676-3987675 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121658495 5273 Angiosperm View MSA
122239961 5265 Fabidae Singleton cluster - no MSA
124042384 5270 Rosid View MSA
123612730 5271 Pentapetalae View MSA
122647217 5272 Eudicot View MSA
120930476 5274 Embryophyte View MSA
123426250 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.532087 0.0 1.79984   High
cufflinks 0.50175 0.0 1.70603   High
cufflinks 0.0612991 0.0 0.236517 Low  
cufflinks 0.38282 0.0 1.33642    
cufflinks 0.035201 0.0 0.139157 Low Low
cufflinks 0.0377454 0.0 0.14872 Low Low
cufflinks 0.0401053 0.0 0.15783 Low Low
cufflinks 0.532143 0.0 1.79372   High
cufflinks 0.149292 0.0 0.554426 Low  
cufflinks 0.407        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.097     Low  
cufflinks 0.204        
cufflinks 0.108        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.765        
cufflinks 0.002     Low Low
cufflinks 0.364        
cufflinks 0.45        
cufflinks 0.483        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.958        
cufflinks 1.376       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.491        
cufflinks 0.006     Low Low

0 Strain