Gene : Glyma.12G057100 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR14155:SF75 - E3 UBIQUITIN LIGASE BIG BROTHER Genomic Order:  571
Name:  ? Glyma.12G057100 Secondary Identifier:  ? PAC:30548609
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G057100 0.5kb upstream 0.5kb upstream 5445 true Chr12: 4151767-4157211 Glycine max
Glyma.12G057100 0.5kb upstream 0.5kb upstream 500 false Chr12: 4151767-4152266 Glycine max
Glyma.12G057100 0.5kb downstream 0.5kb downstream 5445 true Chr12: 4152267-4157711 Glycine max
Glyma.12G057100 0.5kb downstream 0.5kb downstream 500 false Chr12: 4157212-4157711 Glycine max
Glyma.12G057100 1.0kb upstream 1.0kb upstream 5945 true Chr12: 4151267-4157211 Glycine max
Glyma.12G057100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 4151267-4152266 Glycine max
Glyma.12G057100 1.0kb downstream 1.0kb downstream 5945 true Chr12: 4152267-4158211 Glycine max
Glyma.12G057100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 4157212-4158211 Glycine max
Glyma.12G057100 2.0kb upstream 2.0kb upstream 6945 true Chr12: 4150267-4157211 Glycine max
Glyma.12G057100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 4150267-4152266 Glycine max
Glyma.12G057100 2.0kb downstream 2.0kb downstream 6945 true Chr12: 4152267-4159211 Glycine max
Glyma.12G057100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 4157212-4159211 Glycine max
Glyma.12G057100 5.0kb upstream 5.0kb upstream 9945 true Chr12: 4147267-4157211 Glycine max
Glyma.12G057100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 4147267-4152266 Glycine max
Glyma.12G057100 5.0kb downstream 5.0kb downstream 9945 true Chr12: 4152267-4162211 Glycine max
Glyma.12G057100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 4157212-4162211 Glycine max
Glyma.12G057100 10.0kb upstream 10.0kb upstream 14945 true Chr12: 4142267-4157211 Glycine max
Glyma.12G057100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 4142267-4152266 Glycine max
Glyma.12G057100 10.0kb downstream 10.0kb downstream 14945 true Chr12: 4152267-4167211 Glycine max
Glyma.12G057100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 4157212-4167211 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302480 5265 Fabidae View MSA
124069902 5270 Rosid View MSA
123752046 5271 Pentapetalae View MSA
122792578 5272 Eudicot View MSA
122048358 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121310941 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.32495 0.0 14.7248   Low
cufflinks 18.8648 0.0 71.396    
cufflinks 3.43179 0.0 17.8436   Low
cufflinks 9.09033 0.0 34.523    
cufflinks 17.846 0.0 60.9676    
cufflinks 17.6033 0.0 60.243    
cufflinks 9.54983 0.0 36.1808    
cufflinks 16.3964 0.0 56.4197    
cufflinks 9.88625 0.0 36.8821    
cufflinks 2.137       High
cufflinks 0.315       Low
cufflinks 0.469        
cufflinks 2.174       High
cufflinks 2.983       High
cufflinks 0.068       Low
cufflinks 1.102        
cufflinks 0.912        
cufflinks 0.768        
cufflinks 2.302       High
cufflinks 1.036        
cufflinks 0.509        
cufflinks 1.059        
cufflinks 0.953        
cufflinks 0.525        
cufflinks 1.163        
cufflinks 0.576        

0 Strain