Gene : Glyma.12G104000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23240//PTHR23240:SF9 - DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED Genomic Order:  1040
Name:  ? Glyma.12G104000 Secondary Identifier:  ? PAC:30547777
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G104000 0.5kb upstream 0.5kb upstream 3153 true Chr12: 9344498-9347650 Glycine max
Glyma.12G104000 0.5kb upstream 0.5kb upstream 500 false Chr12: 9344498-9344997 Glycine max
Glyma.12G104000 0.5kb downstream 0.5kb downstream 3153 true Chr12: 9344998-9348150 Glycine max
Glyma.12G104000 0.5kb downstream 0.5kb downstream 500 false Chr12: 9347651-9348150 Glycine max
Glyma.12G104000 1.0kb upstream 1.0kb upstream 3653 true Chr12: 9343998-9347650 Glycine max
Glyma.12G104000 1.0kb upstream 1.0kb upstream 1000 false Chr12: 9343998-9344997 Glycine max
Glyma.12G104000 1.0kb downstream 1.0kb downstream 3653 true Chr12: 9344998-9348650 Glycine max
Glyma.12G104000 1.0kb downstream 1.0kb downstream 1000 false Chr12: 9347651-9348650 Glycine max
Glyma.12G104000 2.0kb upstream 2.0kb upstream 4653 true Chr12: 9342998-9347650 Glycine max
Glyma.12G104000 2.0kb upstream 2.0kb upstream 2000 false Chr12: 9342998-9344997 Glycine max
Glyma.12G104000 2.0kb downstream 2.0kb downstream 4653 true Chr12: 9344998-9349650 Glycine max
Glyma.12G104000 2.0kb downstream 2.0kb downstream 2000 false Chr12: 9347651-9349650 Glycine max
Glyma.12G104000 5.0kb upstream 5.0kb upstream 7653 true Chr12: 9339998-9347650 Glycine max
Glyma.12G104000 5.0kb upstream 5.0kb upstream 5000 false Chr12: 9339998-9344997 Glycine max
Glyma.12G104000 5.0kb downstream 5.0kb downstream 7653 true Chr12: 9344998-9352650 Glycine max
Glyma.12G104000 5.0kb downstream 5.0kb downstream 5000 false Chr12: 9347651-9352650 Glycine max
Glyma.12G104000 10.0kb upstream 10.0kb upstream 12653 true Chr12: 9334998-9347650 Glycine max
Glyma.12G104000 10.0kb upstream 10.0kb upstream 10000 false Chr12: 9334998-9344997 Glycine max
Glyma.12G104000 10.0kb downstream 10.0kb downstream 12653 true Chr12: 9344998-9357650 Glycine max
Glyma.12G104000 10.0kb downstream 10.0kb downstream 10000 false Chr12: 9347651-9357650 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297277 5265 Fabidae View MSA
124073622 5270 Rosid View MSA
123741645 5271 Pentapetalae View MSA
122793173 5272 Eudicot View MSA
122046861 5273 Angiosperm View MSA
121351448 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.713933 0.0 2.60576   Low
cufflinks 3.17576 0.0 9.97313   High
cufflinks 1.0517 0.0 3.74551    
cufflinks 1.74935 0.0 5.94047    
cufflinks 1.38912 0.0 4.82105    
cufflinks 1.13787 0.0 4.02165    
cufflinks 1.05197 0.0 3.73898    
cufflinks 0.896971 0.0 3.22595    
cufflinks 1.56529 0.0 5.37807    
cufflinks 0.512        
cufflinks 0.051     Low Low
cufflinks 0.893        
cufflinks 1.438        
cufflinks 1.202        
cufflinks 0.161        
cufflinks 0.73        
cufflinks 0.047     Low Low
cufflinks 0.615        
cufflinks 2.892       High
cufflinks 0.572        
cufflinks 0.107        
cufflinks 0.681        
cufflinks 2.077       High
cufflinks 0.058     Low Low
cufflinks 0.648        
cufflinks 0.113        

0 Strain